Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0527 and Echvi_0528 are separated by 46 nucleotides Echvi_0528 and Echvi_0529 are separated by 8 nucleotides Echvi_0529 and Echvi_0530 are separated by 45 nucleotides Echvi_0530 and Echvi_0531 are separated by 8 nucleotides Echvi_0531 and Echvi_0532 are separated by 45 nucleotides Echvi_0532 and Echvi_0533 are separated by 48 nucleotides Echvi_0533 and Echvi_0534 are separated by 47 nucleotides Echvi_0534 and Echvi_0535 are separated by 142 nucleotides
Echvi_0527: Echvi_0527 - Predicted endonuclease containing a URI domain, at 595,472 to 595,720
_0527
Echvi_0528: Echvi_0528 - tRNA, at 595,767 to 595,843
_0528
Echvi_0529: Echvi_0529 - Predicted endonuclease containing a URI domain, at 595,852 to 596,106
_0529
Echvi_0530: Echvi_0530 - tRNA, at 596,152 to 596,228
_0530
Echvi_0531: Echvi_0531 - Predicted endonuclease containing a URI domain, at 596,237 to 596,491
_0531
Echvi_0532: Echvi_0532 - tRNA, at 596,537 to 596,611
_0532
Echvi_0533: Echvi_0533 - tRNA, at 596,660 to 596,737
_0533
Echvi_0534: Echvi_0534 - tRNA, at 596,785 to 596,864
_0534
Echvi_0535: Echvi_0535 - NAD-dependent aldehyde dehydrogenases, at 597,007 to 598,551
_0535
Position (kb) 596
597 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 595.668 kb on - strand, within Echvi_0527 at 595.668 kb on - strand, within Echvi_0527 at 595.672 kb on - strand, within Echvi_0527 at 595.672 kb on - strand, within Echvi_0527 at 595.675 kb on - strand, within Echvi_0527 at 595.675 kb on - strand, within Echvi_0527 at 596.521 kb on + strand at 596.955 kb on + strand at 596.966 kb on + strand at 596.990 kb on + strand at 597.012 kb on + strand at 597.021 kb on + strand at 597.048 kb on + strand at 597.048 kb on + strand at 597.049 kb on - strand at 597.051 kb on + strand at 597.053 kb on + strand at 597.053 kb on + strand at 597.053 kb on + strand at 597.053 kb on + strand at 597.054 kb on - strand at 597.081 kb on + strand at 597.081 kb on + strand at 597.083 kb on + strand at 597.083 kb on + strand at 597.083 kb on + strand at 597.083 kb on + strand at 597.084 kb on - strand at 597.171 kb on + strand, within Echvi_0535 at 597.180 kb on + strand, within Echvi_0535 at 597.180 kb on + strand, within Echvi_0535 at 597.282 kb on + strand, within Echvi_0535 at 597.283 kb on - strand, within Echvi_0535 at 597.316 kb on - strand, within Echvi_0535 at 597.317 kb on + strand, within Echvi_0535 at 597.318 kb on - strand, within Echvi_0535 at 597.325 kb on - strand, within Echvi_0535 at 597.329 kb on + strand, within Echvi_0535 at 597.329 kb on + strand, within Echvi_0535 at 597.330 kb on - strand, within Echvi_0535 at 597.330 kb on - strand, within Echvi_0535 at 597.330 kb on - strand, within Echvi_0535 at 597.330 kb on - strand, within Echvi_0535 at 597.388 kb on + strand, within Echvi_0535 at 597.388 kb on + strand, within Echvi_0535 at 597.388 kb on + strand, within Echvi_0535 at 597.404 kb on + strand, within Echvi_0535 at 597.404 kb on + strand, within Echvi_0535 at 597.405 kb on - strand, within Echvi_0535 at 597.405 kb on - strand, within Echvi_0535 at 597.419 kb on + strand, within Echvi_0535 at 597.419 kb on + strand, within Echvi_0535 at 597.420 kb on - strand, within Echvi_0535 at 597.420 kb on - strand, within Echvi_0535 at 597.420 kb on - strand, within Echvi_0535 at 597.452 kb on - strand, within Echvi_0535 at 597.498 kb on - strand, within Echvi_0535 at 597.520 kb on + strand, within Echvi_0535 at 597.648 kb on + strand, within Echvi_0535 at 597.648 kb on + strand, within Echvi_0535 at 597.649 kb on - strand, within Echvi_0535 at 597.649 kb on - strand, within Echvi_0535 at 597.702 kb on + strand, within Echvi_0535 at 597.702 kb on + strand, within Echvi_0535 at 597.702 kb on + strand, within Echvi_0535 at 597.703 kb on - strand, within Echvi_0535 at 597.703 kb on - strand, within Echvi_0535 at 597.703 kb on - strand, within Echvi_0535 at 597.730 kb on - strand, within Echvi_0535 at 597.732 kb on + strand, within Echvi_0535 at 597.732 kb on + strand, within Echvi_0535 at 597.732 kb on + strand, within Echvi_0535 at 597.733 kb on - strand, within Echvi_0535 at 597.733 kb on - strand, within Echvi_0535 at 597.733 kb on - strand, within Echvi_0535
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 595,668 - Echvi_0527 0.79 +1.1 595,668 - Echvi_0527 0.79 +0.2 595,672 - Echvi_0527 0.80 -0.7 595,672 - Echvi_0527 0.80 +1.3 595,675 - Echvi_0527 0.82 -0.3 595,675 - Echvi_0527 0.82 -0.2 596,521 + -0.1 596,955 + -1.3 596,966 + -1.3 596,990 + -1.6 597,012 + +0.2 597,021 + -0.2 597,048 + -0.5 597,048 + +0.6 597,049 - +0.2 597,051 + +0.9 597,053 + -1.2 597,053 + +0.7 597,053 + -0.7 597,053 + -0.5 597,054 - -1.0 597,081 + -0.0 597,081 + -0.3 597,083 + +0.5 597,083 + +1.0 597,083 + -0.5 597,083 + -0.6 597,084 - -0.8 597,171 + Echvi_0535 0.11 +0.0 597,180 + Echvi_0535 0.11 -2.4 597,180 + Echvi_0535 0.11 +2.5 597,282 + Echvi_0535 0.18 -2.3 597,283 - Echvi_0535 0.18 -0.4 597,316 - Echvi_0535 0.20 -1.6 597,317 + Echvi_0535 0.20 +0.0 597,318 - Echvi_0535 0.20 -0.8 597,325 - Echvi_0535 0.21 -0.4 597,329 + Echvi_0535 0.21 -0.3 597,329 + Echvi_0535 0.21 +0.8 597,330 - Echvi_0535 0.21 +0.7 597,330 - Echvi_0535 0.21 -0.5 597,330 - Echvi_0535 0.21 -0.5 597,330 - Echvi_0535 0.21 -0.4 597,388 + Echvi_0535 0.25 +0.2 597,388 + Echvi_0535 0.25 +0.3 597,388 + Echvi_0535 0.25 -2.0 597,404 + Echvi_0535 0.26 +0.3 597,404 + Echvi_0535 0.26 -1.4 597,405 - Echvi_0535 0.26 -0.3 597,405 - Echvi_0535 0.26 +1.5 597,419 + Echvi_0535 0.27 +0.6 597,419 + Echvi_0535 0.27 -1.1 597,420 - Echvi_0535 0.27 +0.9 597,420 - Echvi_0535 0.27 +0.4 597,420 - Echvi_0535 0.27 +0.8 597,452 - Echvi_0535 0.29 -0.6 597,498 - Echvi_0535 0.32 +1.0 597,520 + Echvi_0535 0.33 -0.3 597,648 + Echvi_0535 0.41 +1.3 597,648 + Echvi_0535 0.41 -0.1 597,649 - Echvi_0535 0.42 +1.6 597,649 - Echvi_0535 0.42 +3.6 597,702 + Echvi_0535 0.45 -0.8 597,702 + Echvi_0535 0.45 +1.8 597,702 + Echvi_0535 0.45 +0.1 597,703 - Echvi_0535 0.45 +0.3 597,703 - Echvi_0535 0.45 -1.8 597,703 - Echvi_0535 0.45 +0.3 597,730 - Echvi_0535 0.47 +0.3 597,732 + Echvi_0535 0.47 +1.1 597,732 + Echvi_0535 0.47 +0.2 597,732 + Echvi_0535 0.47 +0.7 597,733 - Echvi_0535 0.47 +0.1 597,733 - Echvi_0535 0.47 -0.2 597,733 - Echvi_0535 0.47 +0.6
Or see this region's nucleotide sequence