Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20390

Experiment: m.b. Lomefloxacin 0.002 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20385 and CA264_20390 are separated by 127 nucleotidesCA264_20390 and CA264_20395 are separated by 104 nucleotides CA264_20385: CA264_20385 - methyltransferase, at 4,698,734 to 4,699,378 _20385 CA264_20390: CA264_20390 - peptidase M16, at 4,699,506 to 4,700,738 _20390 CA264_20395: CA264_20395 - hypothetical protein, at 4,700,843 to 4,701,589 _20395 Position (kb) 4699 4700 4701Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4698.532 kb on - strandat 4698.607 kb on - strandat 4698.660 kb on + strandat 4698.661 kb on - strandat 4698.662 kb on + strandat 4698.733 kb on - strandat 4698.862 kb on - strand, within CA264_20385at 4698.904 kb on + strand, within CA264_20385at 4698.904 kb on + strand, within CA264_20385at 4698.905 kb on - strand, within CA264_20385at 4698.945 kb on + strand, within CA264_20385at 4698.945 kb on + strand, within CA264_20385at 4698.945 kb on + strand, within CA264_20385at 4699.224 kb on + strand, within CA264_20385at 4699.449 kb on + strandat 4699.470 kb on - strandat 4699.476 kb on + strandat 4699.488 kb on + strandat 4699.488 kb on + strandat 4699.492 kb on - strandat 4699.492 kb on - strandat 4699.498 kb on + strandat 4699.515 kb on + strandat 4699.515 kb on + strandat 4699.519 kb on + strandat 4699.519 kb on + strandat 4699.520 kb on - strandat 4699.609 kb on - strandat 4699.631 kb on + strand, within CA264_20390at 4699.804 kb on - strand, within CA264_20390at 4699.828 kb on + strand, within CA264_20390at 4699.828 kb on + strand, within CA264_20390at 4699.855 kb on + strand, within CA264_20390at 4699.856 kb on - strand, within CA264_20390at 4699.864 kb on + strand, within CA264_20390at 4699.864 kb on + strand, within CA264_20390at 4699.864 kb on + strand, within CA264_20390at 4699.962 kb on - strand, within CA264_20390at 4699.996 kb on + strand, within CA264_20390at 4699.997 kb on - strand, within CA264_20390at 4699.997 kb on - strand, within CA264_20390at 4700.034 kb on - strand, within CA264_20390at 4700.062 kb on - strand, within CA264_20390at 4700.065 kb on + strand, within CA264_20390at 4700.065 kb on + strand, within CA264_20390at 4700.065 kb on + strand, within CA264_20390at 4700.065 kb on + strand, within CA264_20390at 4700.066 kb on - strand, within CA264_20390at 4700.066 kb on - strand, within CA264_20390at 4700.066 kb on - strand, within CA264_20390at 4700.066 kb on - strand, within CA264_20390at 4700.066 kb on - strand, within CA264_20390at 4700.073 kb on - strand, within CA264_20390at 4700.166 kb on + strand, within CA264_20390at 4700.341 kb on - strand, within CA264_20390at 4700.344 kb on + strand, within CA264_20390at 4700.344 kb on + strand, within CA264_20390at 4700.406 kb on - strand, within CA264_20390at 4700.473 kb on + strand, within CA264_20390at 4700.474 kb on - strand, within CA264_20390at 4700.648 kb on + strandat 4700.692 kb on - strandat 4700.717 kb on + strandat 4700.717 kb on + strandat 4700.718 kb on - strandat 4700.724 kb on - strandat 4700.728 kb on + strandat 4700.729 kb on - strandat 4700.873 kb on - strandat 4700.901 kb on + strandat 4700.956 kb on - strand, within CA264_20395at 4701.016 kb on + strand, within CA264_20395at 4701.068 kb on + strand, within CA264_20395at 4701.068 kb on + strand, within CA264_20395at 4701.069 kb on - strand, within CA264_20395at 4701.069 kb on - strand, within CA264_20395at 4701.073 kb on - strand, within CA264_20395at 4701.101 kb on + strand, within CA264_20395at 4701.157 kb on + strand, within CA264_20395at 4701.171 kb on + strand, within CA264_20395at 4701.171 kb on + strand, within CA264_20395at 4701.172 kb on - strand, within CA264_20395at 4701.382 kb on + strand, within CA264_20395at 4701.383 kb on - strand, within CA264_20395at 4701.423 kb on + strand, within CA264_20395at 4701.442 kb on + strand, within CA264_20395at 4701.476 kb on + strand, within CA264_20395at 4701.477 kb on - strand, within CA264_20395at 4701.525 kb on + strandat 4701.525 kb on + strandat 4701.525 kb on + strandat 4701.525 kb on + strandat 4701.525 kb on + strandat 4701.525 kb on + strandat 4701.526 kb on - strandat 4701.526 kb on - strandat 4701.589 kb on + strandat 4701.590 kb on - strandat 4701.616 kb on + strandat 4701.617 kb on - strandat 4701.625 kb on + strandat 4701.631 kb on + strandat 4701.632 kb on - strandat 4701.636 kb on + strandat 4701.663 kb on - strandat 4701.666 kb on + strandat 4701.705 kb on - strandat 4701.712 kb on + strandat 4701.713 kb on - strandat 4701.721 kb on + strandat 4701.722 kb on - strandat 4701.724 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.002 mM
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4,698,532 - -0.3
4,698,607 - -0.0
4,698,660 + +0.9
4,698,661 - +0.4
4,698,662 + -0.3
4,698,733 - -0.1
4,698,862 - CA264_20385 0.20 -1.1
4,698,904 + CA264_20385 0.26 -0.1
4,698,904 + CA264_20385 0.26 -0.6
4,698,905 - CA264_20385 0.27 +0.4
4,698,945 + CA264_20385 0.33 -0.1
4,698,945 + CA264_20385 0.33 -0.6
4,698,945 + CA264_20385 0.33 -0.2
4,699,224 + CA264_20385 0.76 -0.5
4,699,449 + -0.5
4,699,470 - -0.1
4,699,476 + -3.0
4,699,488 + -0.6
4,699,488 + -0.5
4,699,492 - +0.6
4,699,492 - +0.8
4,699,498 + -0.2
4,699,515 + -1.2
4,699,515 + -2.2
4,699,519 + -2.1
4,699,519 + -0.2
4,699,520 - -0.1
4,699,609 - -2.1
4,699,631 + CA264_20390 0.10 -1.0
4,699,804 - CA264_20390 0.24 -0.4
4,699,828 + CA264_20390 0.26 +0.1
4,699,828 + CA264_20390 0.26 -2.0
4,699,855 + CA264_20390 0.28 -1.4
4,699,856 - CA264_20390 0.28 -0.8
4,699,864 + CA264_20390 0.29 +0.2
4,699,864 + CA264_20390 0.29 -1.6
4,699,864 + CA264_20390 0.29 -1.3
4,699,962 - CA264_20390 0.37 -0.9
4,699,996 + CA264_20390 0.40 -1.7
4,699,997 - CA264_20390 0.40 -0.9
4,699,997 - CA264_20390 0.40 -1.2
4,700,034 - CA264_20390 0.43 -0.7
4,700,062 - CA264_20390 0.45 -0.5
4,700,065 + CA264_20390 0.45 -0.4
4,700,065 + CA264_20390 0.45 -0.3
4,700,065 + CA264_20390 0.45 -1.3
4,700,065 + CA264_20390 0.45 -0.9
4,700,066 - CA264_20390 0.45 +0.2
4,700,066 - CA264_20390 0.45 -0.5
4,700,066 - CA264_20390 0.45 +1.5
4,700,066 - CA264_20390 0.45 -0.9
4,700,066 - CA264_20390 0.45 -2.8
4,700,073 - CA264_20390 0.46 -0.9
4,700,166 + CA264_20390 0.54 -1.7
4,700,341 - CA264_20390 0.68 -1.4
4,700,344 + CA264_20390 0.68 -1.2
4,700,344 + CA264_20390 0.68 -2.3
4,700,406 - CA264_20390 0.73 -0.9
4,700,473 + CA264_20390 0.78 -0.9
4,700,474 - CA264_20390 0.79 -1.4
4,700,648 + -1.5
4,700,692 - -2.1
4,700,717 + -0.9
4,700,717 + -1.9
4,700,718 - -1.6
4,700,724 - -0.8
4,700,728 + -0.6
4,700,729 - -1.3
4,700,873 - -0.8
4,700,901 + +0.9
4,700,956 - CA264_20395 0.15 +0.3
4,701,016 + CA264_20395 0.23 +1.6
4,701,068 + CA264_20395 0.30 -0.6
4,701,068 + CA264_20395 0.30 -0.3
4,701,069 - CA264_20395 0.30 -0.2
4,701,069 - CA264_20395 0.30 +0.2
4,701,073 - CA264_20395 0.31 -0.0
4,701,101 + CA264_20395 0.35 +0.1
4,701,157 + CA264_20395 0.42 +0.1
4,701,171 + CA264_20395 0.44 +0.3
4,701,171 + CA264_20395 0.44 -0.2
4,701,172 - CA264_20395 0.44 +1.0
4,701,382 + CA264_20395 0.72 -0.2
4,701,383 - CA264_20395 0.72 +0.5
4,701,423 + CA264_20395 0.78 -0.1
4,701,442 + CA264_20395 0.80 -0.1
4,701,476 + CA264_20395 0.85 -0.9
4,701,477 - CA264_20395 0.85 -0.1
4,701,525 + -0.2
4,701,525 + -0.3
4,701,525 + -0.7
4,701,525 + +1.2
4,701,525 + -1.4
4,701,525 + +0.2
4,701,526 - +0.2
4,701,526 - +2.1
4,701,589 + -0.9
4,701,590 - +0.0
4,701,616 + +0.1
4,701,617 - +0.1
4,701,625 + -0.6
4,701,631 + +0.0
4,701,632 - -0.3
4,701,636 + +0.3
4,701,663 - +0.3
4,701,666 + +0.0
4,701,705 - -0.3
4,701,712 + -1.0
4,701,713 - -0.7
4,701,721 + -0.4
4,701,722 - -0.6
4,701,724 + -0.1

Or see this region's nucleotide sequence