Experiment: m.b. Lomefloxacin 0.002 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_20385 and CA264_20390 are separated by 127 nucleotides CA264_20390 and CA264_20395 are separated by 104 nucleotides
CA264_20385: CA264_20385 - methyltransferase, at 4,698,734 to 4,699,378
_20385
CA264_20390: CA264_20390 - peptidase M16, at 4,699,506 to 4,700,738
_20390
CA264_20395: CA264_20395 - hypothetical protein, at 4,700,843 to 4,701,589
_20395
Position (kb)
4699
4700
4701 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4698.532 kb on - strand at 4698.607 kb on - strand at 4698.660 kb on + strand at 4698.661 kb on - strand at 4698.662 kb on + strand at 4698.733 kb on - strand at 4698.862 kb on - strand, within CA264_20385 at 4698.904 kb on + strand, within CA264_20385 at 4698.904 kb on + strand, within CA264_20385 at 4698.905 kb on - strand, within CA264_20385 at 4698.945 kb on + strand, within CA264_20385 at 4698.945 kb on + strand, within CA264_20385 at 4698.945 kb on + strand, within CA264_20385 at 4699.224 kb on + strand, within CA264_20385 at 4699.449 kb on + strand at 4699.470 kb on - strand at 4699.476 kb on + strand at 4699.488 kb on + strand at 4699.488 kb on + strand at 4699.492 kb on - strand at 4699.492 kb on - strand at 4699.498 kb on + strand at 4699.515 kb on + strand at 4699.515 kb on + strand at 4699.519 kb on + strand at 4699.519 kb on + strand at 4699.520 kb on - strand at 4699.609 kb on - strand at 4699.631 kb on + strand, within CA264_20390 at 4699.804 kb on - strand, within CA264_20390 at 4699.828 kb on + strand, within CA264_20390 at 4699.828 kb on + strand, within CA264_20390 at 4699.855 kb on + strand, within CA264_20390 at 4699.856 kb on - strand, within CA264_20390 at 4699.864 kb on + strand, within CA264_20390 at 4699.864 kb on + strand, within CA264_20390 at 4699.864 kb on + strand, within CA264_20390 at 4699.962 kb on - strand, within CA264_20390 at 4699.996 kb on + strand, within CA264_20390 at 4699.997 kb on - strand, within CA264_20390 at 4699.997 kb on - strand, within CA264_20390 at 4700.034 kb on - strand, within CA264_20390 at 4700.062 kb on - strand, within CA264_20390 at 4700.065 kb on + strand, within CA264_20390 at 4700.065 kb on + strand, within CA264_20390 at 4700.065 kb on + strand, within CA264_20390 at 4700.065 kb on + strand, within CA264_20390 at 4700.066 kb on - strand, within CA264_20390 at 4700.066 kb on - strand, within CA264_20390 at 4700.066 kb on - strand, within CA264_20390 at 4700.066 kb on - strand, within CA264_20390 at 4700.066 kb on - strand, within CA264_20390 at 4700.073 kb on - strand, within CA264_20390 at 4700.166 kb on + strand, within CA264_20390 at 4700.341 kb on - strand, within CA264_20390 at 4700.344 kb on + strand, within CA264_20390 at 4700.344 kb on + strand, within CA264_20390 at 4700.406 kb on - strand, within CA264_20390 at 4700.473 kb on + strand, within CA264_20390 at 4700.474 kb on - strand, within CA264_20390 at 4700.648 kb on + strand at 4700.692 kb on - strand at 4700.717 kb on + strand at 4700.717 kb on + strand at 4700.718 kb on - strand at 4700.724 kb on - strand at 4700.728 kb on + strand at 4700.729 kb on - strand at 4700.873 kb on - strand at 4700.901 kb on + strand at 4700.956 kb on - strand, within CA264_20395 at 4701.016 kb on + strand, within CA264_20395 at 4701.068 kb on + strand, within CA264_20395 at 4701.068 kb on + strand, within CA264_20395 at 4701.069 kb on - strand, within CA264_20395 at 4701.069 kb on - strand, within CA264_20395 at 4701.073 kb on - strand, within CA264_20395 at 4701.101 kb on + strand, within CA264_20395 at 4701.157 kb on + strand, within CA264_20395 at 4701.171 kb on + strand, within CA264_20395 at 4701.171 kb on + strand, within CA264_20395 at 4701.172 kb on - strand, within CA264_20395 at 4701.382 kb on + strand, within CA264_20395 at 4701.383 kb on - strand, within CA264_20395 at 4701.423 kb on + strand, within CA264_20395 at 4701.442 kb on + strand, within CA264_20395 at 4701.476 kb on + strand, within CA264_20395 at 4701.477 kb on - strand, within CA264_20395 at 4701.525 kb on + strand at 4701.525 kb on + strand at 4701.525 kb on + strand at 4701.525 kb on + strand at 4701.525 kb on + strand at 4701.525 kb on + strand at 4701.526 kb on - strand at 4701.526 kb on - strand at 4701.589 kb on + strand at 4701.590 kb on - strand at 4701.616 kb on + strand at 4701.617 kb on - strand at 4701.625 kb on + strand at 4701.631 kb on + strand at 4701.632 kb on - strand at 4701.636 kb on + strand at 4701.663 kb on - strand at 4701.666 kb on + strand at 4701.705 kb on - strand at 4701.712 kb on + strand at 4701.713 kb on - strand at 4701.721 kb on + strand at 4701.722 kb on - strand at 4701.724 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.002 mM remove 4,698,532 - -0.3 4,698,607 - -0.0 4,698,660 + +0.9 4,698,661 - +0.4 4,698,662 + -0.3 4,698,733 - -0.1 4,698,862 - CA264_20385 0.20 -1.1 4,698,904 + CA264_20385 0.26 -0.1 4,698,904 + CA264_20385 0.26 -0.6 4,698,905 - CA264_20385 0.27 +0.4 4,698,945 + CA264_20385 0.33 -0.1 4,698,945 + CA264_20385 0.33 -0.6 4,698,945 + CA264_20385 0.33 -0.2 4,699,224 + CA264_20385 0.76 -0.5 4,699,449 + -0.5 4,699,470 - -0.1 4,699,476 + -3.0 4,699,488 + -0.6 4,699,488 + -0.5 4,699,492 - +0.6 4,699,492 - +0.8 4,699,498 + -0.2 4,699,515 + -1.2 4,699,515 + -2.2 4,699,519 + -2.1 4,699,519 + -0.2 4,699,520 - -0.1 4,699,609 - -2.1 4,699,631 + CA264_20390 0.10 -1.0 4,699,804 - CA264_20390 0.24 -0.4 4,699,828 + CA264_20390 0.26 +0.1 4,699,828 + CA264_20390 0.26 -2.0 4,699,855 + CA264_20390 0.28 -1.4 4,699,856 - CA264_20390 0.28 -0.8 4,699,864 + CA264_20390 0.29 +0.2 4,699,864 + CA264_20390 0.29 -1.6 4,699,864 + CA264_20390 0.29 -1.3 4,699,962 - CA264_20390 0.37 -0.9 4,699,996 + CA264_20390 0.40 -1.7 4,699,997 - CA264_20390 0.40 -0.9 4,699,997 - CA264_20390 0.40 -1.2 4,700,034 - CA264_20390 0.43 -0.7 4,700,062 - CA264_20390 0.45 -0.5 4,700,065 + CA264_20390 0.45 -0.4 4,700,065 + CA264_20390 0.45 -0.3 4,700,065 + CA264_20390 0.45 -1.3 4,700,065 + CA264_20390 0.45 -0.9 4,700,066 - CA264_20390 0.45 +0.2 4,700,066 - CA264_20390 0.45 -0.5 4,700,066 - CA264_20390 0.45 +1.5 4,700,066 - CA264_20390 0.45 -0.9 4,700,066 - CA264_20390 0.45 -2.8 4,700,073 - CA264_20390 0.46 -0.9 4,700,166 + CA264_20390 0.54 -1.7 4,700,341 - CA264_20390 0.68 -1.4 4,700,344 + CA264_20390 0.68 -1.2 4,700,344 + CA264_20390 0.68 -2.3 4,700,406 - CA264_20390 0.73 -0.9 4,700,473 + CA264_20390 0.78 -0.9 4,700,474 - CA264_20390 0.79 -1.4 4,700,648 + -1.5 4,700,692 - -2.1 4,700,717 + -0.9 4,700,717 + -1.9 4,700,718 - -1.6 4,700,724 - -0.8 4,700,728 + -0.6 4,700,729 - -1.3 4,700,873 - -0.8 4,700,901 + +0.9 4,700,956 - CA264_20395 0.15 +0.3 4,701,016 + CA264_20395 0.23 +1.6 4,701,068 + CA264_20395 0.30 -0.6 4,701,068 + CA264_20395 0.30 -0.3 4,701,069 - CA264_20395 0.30 -0.2 4,701,069 - CA264_20395 0.30 +0.2 4,701,073 - CA264_20395 0.31 -0.0 4,701,101 + CA264_20395 0.35 +0.1 4,701,157 + CA264_20395 0.42 +0.1 4,701,171 + CA264_20395 0.44 +0.3 4,701,171 + CA264_20395 0.44 -0.2 4,701,172 - CA264_20395 0.44 +1.0 4,701,382 + CA264_20395 0.72 -0.2 4,701,383 - CA264_20395 0.72 +0.5 4,701,423 + CA264_20395 0.78 -0.1 4,701,442 + CA264_20395 0.80 -0.1 4,701,476 + CA264_20395 0.85 -0.9 4,701,477 - CA264_20395 0.85 -0.1 4,701,525 + -0.2 4,701,525 + -0.3 4,701,525 + -0.7 4,701,525 + +1.2 4,701,525 + -1.4 4,701,525 + +0.2 4,701,526 - +0.2 4,701,526 - +2.1 4,701,589 + -0.9 4,701,590 - +0.0 4,701,616 + +0.1 4,701,617 - +0.1 4,701,625 + -0.6 4,701,631 + +0.0 4,701,632 - -0.3 4,701,636 + +0.3 4,701,663 - +0.3 4,701,666 + +0.0 4,701,705 - -0.3 4,701,712 + -1.0 4,701,713 - -0.7 4,701,721 + -0.4 4,701,722 - -0.6 4,701,724 + -0.1
Or see this region's nucleotide sequence