Experiment: m.b. Lomefloxacin 0.002 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_16920 and CA264_16925 are separated by 9 nucleotides CA264_16925 and CA264_16930 are separated by 174 nucleotides CA264_16930 and CA264_16935 are separated by 110 nucleotides CA264_16935 and CA264_16940 are separated by 135 nucleotides
CA264_16920: CA264_16920 - zinc/iron permease, at 3,940,924 to 3,941,673
_16920
CA264_16925: CA264_16925 - SAM-dependent methyltransferase, at 3,941,683 to 3,942,426
_16925
CA264_16930: CA264_16930 - hypothetical protein, at 3,942,601 to 3,942,906
_16930
CA264_16935: CA264_16935 - hypothetical protein, at 3,943,017 to 3,943,574
_16935
CA264_16940: CA264_16940 - nicotinate-nucleotide diphosphorylase (carboxylating), at 3,943,710 to 3,944,567
_16940
Position (kb)
3942
3943 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3941.659 kb on + strand at 3941.665 kb on + strand at 3941.665 kb on + strand at 3941.701 kb on + strand at 3941.701 kb on + strand at 3941.702 kb on - strand at 3941.744 kb on + strand at 3941.784 kb on + strand, within CA264_16925 at 3941.785 kb on - strand, within CA264_16925 at 3941.785 kb on - strand, within CA264_16925 at 3941.837 kb on + strand, within CA264_16925 at 3941.837 kb on + strand, within CA264_16925 at 3941.838 kb on - strand, within CA264_16925 at 3941.917 kb on + strand, within CA264_16925 at 3942.051 kb on + strand, within CA264_16925 at 3942.066 kb on - strand, within CA264_16925 at 3942.236 kb on + strand, within CA264_16925 at 3942.302 kb on + strand, within CA264_16925 at 3942.302 kb on + strand, within CA264_16925 at 3942.361 kb on + strand at 3942.361 kb on + strand at 3942.362 kb on - strand at 3942.368 kb on + strand at 3942.368 kb on + strand at 3942.371 kb on + strand at 3942.372 kb on - strand at 3942.459 kb on - strand at 3942.468 kb on - strand at 3942.528 kb on - strand at 3942.649 kb on + strand, within CA264_16930 at 3942.701 kb on - strand, within CA264_16930 at 3942.773 kb on + strand, within CA264_16930 at 3942.774 kb on - strand, within CA264_16930 at 3942.774 kb on - strand at 3942.774 kb on - strand, within CA264_16930 at 3942.774 kb on - strand, within CA264_16930 at 3942.801 kb on - strand, within CA264_16930 at 3942.884 kb on - strand at 3942.884 kb on - strand at 3942.890 kb on - strand at 3942.892 kb on + strand at 3942.893 kb on - strand at 3942.975 kb on + strand at 3943.002 kb on + strand at 3943.002 kb on + strand at 3943.012 kb on + strand at 3943.101 kb on + strand, within CA264_16935 at 3943.294 kb on + strand, within CA264_16935 at 3943.443 kb on + strand, within CA264_16935 at 3943.466 kb on - strand, within CA264_16935 at 3943.531 kb on + strand at 3943.532 kb on - strand at 3943.610 kb on - strand at 3943.612 kb on + strand at 3943.681 kb on + strand at 3943.691 kb on + strand at 3943.692 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.002 mM remove 3,941,659 + -0.4 3,941,665 + +0.1 3,941,665 + +1.0 3,941,701 + +0.2 3,941,701 + +0.6 3,941,702 - -0.3 3,941,744 + -0.3 3,941,784 + CA264_16925 0.14 +0.8 3,941,785 - CA264_16925 0.14 -0.3 3,941,785 - CA264_16925 0.14 +0.2 3,941,837 + CA264_16925 0.21 -0.2 3,941,837 + CA264_16925 0.21 -0.5 3,941,838 - CA264_16925 0.21 -0.2 3,941,917 + CA264_16925 0.31 -1.3 3,942,051 + CA264_16925 0.49 -0.8 3,942,066 - CA264_16925 0.51 -0.3 3,942,236 + CA264_16925 0.74 -1.8 3,942,302 + CA264_16925 0.83 +0.6 3,942,302 + CA264_16925 0.83 -0.7 3,942,361 + -0.4 3,942,361 + +0.9 3,942,362 - -0.6 3,942,368 + -0.3 3,942,368 + -0.4 3,942,371 + +0.8 3,942,372 - -0.3 3,942,459 - -0.5 3,942,468 - -0.0 3,942,528 - +0.2 3,942,649 + CA264_16930 0.16 -0.3 3,942,701 - CA264_16930 0.33 -0.0 3,942,773 + CA264_16930 0.56 -0.1 3,942,774 - CA264_16930 0.57 -0.2 3,942,774 - +2.6 3,942,774 - CA264_16930 0.57 -0.7 3,942,774 - CA264_16930 0.57 -0.6 3,942,801 - CA264_16930 0.65 -1.0 3,942,884 - -0.2 3,942,884 - -0.6 3,942,890 - +0.0 3,942,892 + +0.1 3,942,893 - -0.7 3,942,975 + -0.1 3,943,002 + +1.4 3,943,002 + -0.1 3,943,012 + -1.1 3,943,101 + CA264_16935 0.15 -0.2 3,943,294 + CA264_16935 0.50 +0.7 3,943,443 + CA264_16935 0.76 -1.7 3,943,466 - CA264_16935 0.80 -1.0 3,943,531 + -0.4 3,943,532 - -0.4 3,943,610 - -0.4 3,943,612 + -1.1 3,943,681 + -0.8 3,943,691 + -1.3 3,943,692 - -1.2
Or see this region's nucleotide sequence