Experiment: m.b. Lomefloxacin 0.002 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_13675 and CA264_13680 are separated by 95 nucleotides CA264_13680 and CA264_13685 are separated by 12 nucleotides CA264_13685 and CA264_13690 are separated by 41 nucleotides
CA264_13675: CA264_13675 - GntR family transcriptional regulator, at 3,197,413 to 3,198,255
_13675
CA264_13680: CA264_13680 - hypothetical protein, at 3,198,351 to 3,200,879
_13680
CA264_13685: CA264_13685 - oxidoreductase, at 3,200,892 to 3,201,563
_13685
CA264_13690: CA264_13690 - SAM-dependent methyltransferase, at 3,201,605 to 3,202,390
_13690
Position (kb)
3198
3199
3200
3201 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3197.388 kb on + strand at 3197.388 kb on + strand at 3197.407 kb on + strand at 3197.407 kb on + strand at 3197.407 kb on + strand at 3197.408 kb on - strand at 3197.408 kb on - strand at 3197.408 kb on - strand at 3197.409 kb on + strand at 3197.417 kb on + strand at 3197.418 kb on - strand at 3197.431 kb on + strand at 3197.431 kb on + strand at 3197.432 kb on - strand at 3197.459 kb on + strand at 3197.459 kb on + strand at 3197.746 kb on + strand, within CA264_13675 at 3197.756 kb on - strand, within CA264_13675 at 3197.786 kb on + strand, within CA264_13675 at 3197.787 kb on - strand, within CA264_13675 at 3197.789 kb on + strand, within CA264_13675 at 3197.790 kb on - strand, within CA264_13675 at 3197.813 kb on - strand, within CA264_13675 at 3197.838 kb on - strand, within CA264_13675 at 3197.862 kb on - strand, within CA264_13675 at 3197.899 kb on - strand, within CA264_13675 at 3197.914 kb on + strand, within CA264_13675 at 3197.915 kb on - strand, within CA264_13675 at 3197.915 kb on - strand, within CA264_13675 at 3197.980 kb on + strand, within CA264_13675 at 3197.980 kb on + strand, within CA264_13675 at 3197.980 kb on + strand, within CA264_13675 at 3197.983 kb on - strand, within CA264_13675 at 3198.284 kb on + strand at 3198.294 kb on + strand at 3198.294 kb on + strand at 3198.295 kb on - strand at 3198.295 kb on - strand at 3198.297 kb on - strand at 3198.315 kb on - strand at 3198.344 kb on - strand at 3198.350 kb on + strand at 3198.350 kb on + strand at 3198.357 kb on - strand at 3198.359 kb on + strand at 3198.360 kb on - strand at 3198.365 kb on - strand at 3198.365 kb on - strand at 3198.367 kb on + strand at 3198.367 kb on + strand at 3198.368 kb on - strand at 3198.380 kb on + strand at 3198.553 kb on - strand at 3198.613 kb on - strand, within CA264_13680 at 3198.670 kb on + strand, within CA264_13680 at 3198.670 kb on + strand, within CA264_13680 at 3198.716 kb on + strand, within CA264_13680 at 3198.741 kb on + strand, within CA264_13680 at 3198.886 kb on + strand, within CA264_13680 at 3198.955 kb on - strand, within CA264_13680 at 3199.003 kb on + strand, within CA264_13680 at 3199.004 kb on - strand, within CA264_13680 at 3199.004 kb on - strand, within CA264_13680 at 3199.008 kb on - strand, within CA264_13680 at 3199.088 kb on + strand, within CA264_13680 at 3199.095 kb on + strand, within CA264_13680 at 3199.095 kb on + strand, within CA264_13680 at 3199.096 kb on - strand, within CA264_13680 at 3199.096 kb on - strand, within CA264_13680 at 3199.096 kb on - strand, within CA264_13680 at 3199.112 kb on - strand, within CA264_13680 at 3199.166 kb on + strand, within CA264_13680 at 3199.187 kb on - strand, within CA264_13680 at 3199.393 kb on - strand, within CA264_13680 at 3199.539 kb on + strand, within CA264_13680 at 3199.539 kb on + strand, within CA264_13680 at 3199.539 kb on + strand, within CA264_13680 at 3199.583 kb on - strand, within CA264_13680 at 3199.605 kb on + strand, within CA264_13680 at 3199.648 kb on - strand, within CA264_13680 at 3199.672 kb on + strand, within CA264_13680 at 3199.673 kb on - strand, within CA264_13680 at 3199.900 kb on + strand, within CA264_13680 at 3199.901 kb on - strand, within CA264_13680 at 3199.914 kb on + strand, within CA264_13680 at 3199.914 kb on + strand, within CA264_13680 at 3199.960 kb on - strand, within CA264_13680 at 3199.989 kb on + strand, within CA264_13680 at 3200.160 kb on + strand, within CA264_13680 at 3200.160 kb on + strand, within CA264_13680 at 3200.166 kb on + strand, within CA264_13680 at 3200.167 kb on - strand, within CA264_13680 at 3200.299 kb on - strand, within CA264_13680 at 3200.406 kb on + strand, within CA264_13680 at 3200.418 kb on + strand, within CA264_13680 at 3200.476 kb on + strand, within CA264_13680 at 3200.500 kb on - strand, within CA264_13680 at 3200.500 kb on - strand, within CA264_13680 at 3200.501 kb on + strand at 3200.574 kb on + strand, within CA264_13680 at 3200.628 kb on + strand at 3200.629 kb on - strand at 3200.655 kb on + strand at 3200.667 kb on - strand at 3200.735 kb on + strand at 3200.777 kb on + strand at 3200.781 kb on - strand at 3200.836 kb on - strand at 3200.841 kb on - strand at 3200.841 kb on - strand at 3200.847 kb on + strand at 3200.847 kb on + strand at 3200.847 kb on + strand at 3200.847 kb on + strand at 3200.848 kb on - strand at 3200.848 kb on - strand at 3200.848 kb on - strand at 3200.848 kb on - strand at 3200.848 kb on - strand at 3200.849 kb on + strand at 3200.849 kb on + strand at 3200.849 kb on + strand at 3200.849 kb on + strand at 3200.850 kb on - strand at 3200.850 kb on - strand at 3200.850 kb on - strand at 3200.850 kb on - strand at 3200.850 kb on - strand at 3200.850 kb on - strand at 3200.852 kb on - strand at 3200.852 kb on - strand at 3200.883 kb on - strand at 3200.892 kb on - strand at 3200.960 kb on - strand, within CA264_13685 at 3200.980 kb on - strand, within CA264_13685 at 3201.073 kb on - strand, within CA264_13685 at 3201.153 kb on + strand, within CA264_13685 at 3201.154 kb on - strand, within CA264_13685 at 3201.160 kb on + strand, within CA264_13685 at 3201.171 kb on + strand, within CA264_13685 at 3201.172 kb on - strand, within CA264_13685 at 3201.172 kb on - strand, within CA264_13685 at 3201.172 kb on - strand, within CA264_13685 at 3201.444 kb on + strand, within CA264_13685 at 3201.519 kb on - strand at 3201.548 kb on - strand at 3201.621 kb on + strand at 3201.621 kb on + strand at 3201.651 kb on - strand at 3201.778 kb on + strand, within CA264_13690 at 3201.779 kb on - strand, within CA264_13690 at 3201.779 kb on - strand, within CA264_13690 at 3201.785 kb on - strand, within CA264_13690 at 3201.818 kb on + strand, within CA264_13690
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.002 mM remove 3,197,388 + -0.3 3,197,388 + +0.1 3,197,407 + +0.5 3,197,407 + -0.3 3,197,407 + -0.5 3,197,408 - +0.6 3,197,408 - -0.5 3,197,408 - -0.2 3,197,409 + -0.4 3,197,417 + -0.6 3,197,418 - +2.0 3,197,431 + +0.3 3,197,431 + -0.0 3,197,432 - -0.0 3,197,459 + +0.0 3,197,459 + +0.1 3,197,746 + CA264_13675 0.40 +0.1 3,197,756 - CA264_13675 0.41 +0.3 3,197,786 + CA264_13675 0.44 +0.1 3,197,787 - CA264_13675 0.44 +1.6 3,197,789 + CA264_13675 0.45 -0.9 3,197,790 - CA264_13675 0.45 +0.4 3,197,813 - CA264_13675 0.47 -0.2 3,197,838 - CA264_13675 0.50 -0.0 3,197,862 - CA264_13675 0.53 +0.1 3,197,899 - CA264_13675 0.58 +0.3 3,197,914 + CA264_13675 0.59 -0.2 3,197,915 - CA264_13675 0.60 +0.5 3,197,915 - CA264_13675 0.60 +0.5 3,197,980 + CA264_13675 0.67 +0.8 3,197,980 + CA264_13675 0.67 +0.2 3,197,980 + CA264_13675 0.67 -2.2 3,197,983 - CA264_13675 0.68 +0.7 3,198,284 + +0.5 3,198,294 + -1.4 3,198,294 + -0.3 3,198,295 - +0.5 3,198,295 - -0.7 3,198,297 - -0.8 3,198,315 - +0.6 3,198,344 - +0.4 3,198,350 + -0.1 3,198,350 + -0.1 3,198,357 - -0.4 3,198,359 + -0.5 3,198,360 - +0.2 3,198,365 - -0.1 3,198,365 - -1.0 3,198,367 + -0.1 3,198,367 + -0.7 3,198,368 - -0.0 3,198,380 + +0.7 3,198,553 - -1.4 3,198,613 - CA264_13680 0.10 +0.0 3,198,670 + CA264_13680 0.13 +1.3 3,198,670 + CA264_13680 0.13 -0.1 3,198,716 + CA264_13680 0.14 +0.3 3,198,741 + CA264_13680 0.15 +0.9 3,198,886 + CA264_13680 0.21 -0.2 3,198,955 - CA264_13680 0.24 -0.4 3,199,003 + CA264_13680 0.26 +0.4 3,199,004 - CA264_13680 0.26 +0.3 3,199,004 - CA264_13680 0.26 -0.3 3,199,008 - CA264_13680 0.26 +0.0 3,199,088 + CA264_13680 0.29 -0.2 3,199,095 + CA264_13680 0.29 -0.1 3,199,095 + CA264_13680 0.29 -0.6 3,199,096 - CA264_13680 0.29 +0.7 3,199,096 - CA264_13680 0.29 -0.8 3,199,096 - CA264_13680 0.29 -0.4 3,199,112 - CA264_13680 0.30 -0.1 3,199,166 + CA264_13680 0.32 +0.3 3,199,187 - CA264_13680 0.33 +0.0 3,199,393 - CA264_13680 0.41 -0.3 3,199,539 + CA264_13680 0.47 +0.6 3,199,539 + CA264_13680 0.47 +1.4 3,199,539 + CA264_13680 0.47 +0.3 3,199,583 - CA264_13680 0.49 -0.2 3,199,605 + CA264_13680 0.50 +0.8 3,199,648 - CA264_13680 0.51 +0.2 3,199,672 + CA264_13680 0.52 -0.0 3,199,673 - CA264_13680 0.52 -0.4 3,199,900 + CA264_13680 0.61 -0.3 3,199,901 - CA264_13680 0.61 -0.4 3,199,914 + CA264_13680 0.62 -0.4 3,199,914 + CA264_13680 0.62 -0.6 3,199,960 - CA264_13680 0.64 +0.3 3,199,989 + CA264_13680 0.65 +0.0 3,200,160 + CA264_13680 0.72 -1.0 3,200,160 + CA264_13680 0.72 -0.0 3,200,166 + CA264_13680 0.72 +0.0 3,200,167 - CA264_13680 0.72 +0.3 3,200,299 - CA264_13680 0.77 -0.2 3,200,406 + CA264_13680 0.81 -0.4 3,200,418 + CA264_13680 0.82 +0.1 3,200,476 + CA264_13680 0.84 +0.5 3,200,500 - CA264_13680 0.85 +0.7 3,200,500 - CA264_13680 0.85 +0.8 3,200,501 + +1.4 3,200,574 + CA264_13680 0.88 +0.2 3,200,628 + +0.1 3,200,629 - -0.0 3,200,655 + -0.0 3,200,667 - +0.4 3,200,735 + -1.4 3,200,777 + -0.2 3,200,781 - +0.6 3,200,836 - +0.1 3,200,841 - +0.3 3,200,841 - -1.1 3,200,847 + -1.0 3,200,847 + +0.2 3,200,847 + +0.5 3,200,847 + +0.1 3,200,848 - +0.0 3,200,848 - -0.7 3,200,848 - -0.5 3,200,848 - +1.1 3,200,848 - +0.0 3,200,849 + +0.3 3,200,849 + -0.1 3,200,849 + +0.4 3,200,849 + -0.3 3,200,850 - +0.9 3,200,850 - +0.1 3,200,850 - -0.9 3,200,850 - +0.7 3,200,850 - -0.5 3,200,850 - +0.3 3,200,852 - -0.7 3,200,852 - -0.5 3,200,883 - +0.4 3,200,892 - -0.7 3,200,960 - CA264_13685 0.10 +0.1 3,200,980 - CA264_13685 0.13 +1.0 3,201,073 - CA264_13685 0.27 -0.4 3,201,153 + CA264_13685 0.39 +0.1 3,201,154 - CA264_13685 0.39 -0.3 3,201,160 + CA264_13685 0.40 -0.4 3,201,171 + CA264_13685 0.42 +0.3 3,201,172 - CA264_13685 0.42 +0.2 3,201,172 - CA264_13685 0.42 -0.4 3,201,172 - CA264_13685 0.42 +0.1 3,201,444 + CA264_13685 0.82 -0.3 3,201,519 - -2.5 3,201,548 - -0.2 3,201,621 + -0.7 3,201,621 + -0.7 3,201,651 - -0.4 3,201,778 + CA264_13690 0.22 -0.1 3,201,779 - CA264_13690 0.22 +0.7 3,201,779 - CA264_13690 0.22 -1.2 3,201,785 - CA264_13690 0.23 +0.3 3,201,818 + CA264_13690 0.27 -0.2
Or see this region's nucleotide sequence