Experiment: m.b. Lomefloxacin 0.002 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_13410 and CA264_13415 are separated by 596 nucleotides CA264_13415 and CA264_13420 are separated by 98 nucleotides CA264_13420 and CA264_13425 are separated by 89 nucleotides
CA264_13410: CA264_13410 - UDP-glucose 6-dehydrogenase, at 3,127,375 to 3,128,733
_13410
CA264_13415: CA264_13415 - alpha/beta hydrolase, at 3,129,330 to 3,130,223
_13415
CA264_13420: CA264_13420 - hypothetical protein, at 3,130,322 to 3,130,507
_13420
CA264_13425: CA264_13425 - FAD-binding oxidoreductase, at 3,130,597 to 3,132,000
_13425
Position (kb)
3129
3130
3131 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3128.752 kb on - strand at 3128.752 kb on - strand at 3128.752 kb on - strand at 3128.757 kb on + strand at 3128.757 kb on + strand at 3128.758 kb on - strand at 3128.758 kb on - strand at 3128.759 kb on + strand at 3128.762 kb on + strand at 3128.763 kb on - strand at 3128.832 kb on - strand at 3128.846 kb on - strand at 3128.851 kb on - strand at 3128.851 kb on - strand at 3128.873 kb on + strand at 3128.874 kb on - strand at 3128.878 kb on - strand at 3128.889 kb on + strand at 3128.889 kb on - strand at 3128.982 kb on - strand at 3128.982 kb on - strand at 3129.052 kb on - strand at 3129.101 kb on - strand at 3129.101 kb on - strand at 3129.120 kb on + strand at 3129.123 kb on + strand at 3129.141 kb on - strand at 3129.194 kb on - strand at 3129.199 kb on - strand at 3129.269 kb on + strand at 3129.270 kb on - strand at 3129.300 kb on - strand at 3129.302 kb on - strand at 3129.307 kb on - strand at 3129.329 kb on + strand at 3129.361 kb on - strand at 3129.374 kb on + strand at 3129.375 kb on - strand at 3129.379 kb on - strand at 3129.408 kb on + strand at 3129.409 kb on - strand at 3129.410 kb on + strand at 3129.412 kb on + strand at 3129.412 kb on + strand at 3129.412 kb on + strand at 3129.412 kb on + strand at 3129.413 kb on - strand at 3129.413 kb on - strand at 3129.489 kb on - strand, within CA264_13415 at 3129.571 kb on - strand, within CA264_13415 at 3129.626 kb on - strand, within CA264_13415 at 3129.646 kb on + strand, within CA264_13415 at 3129.647 kb on - strand, within CA264_13415 at 3129.679 kb on - strand, within CA264_13415 at 3129.894 kb on + strand, within CA264_13415 at 3129.897 kb on - strand, within CA264_13415 at 3130.026 kb on - strand, within CA264_13415 at 3130.026 kb on - strand, within CA264_13415 at 3130.101 kb on + strand, within CA264_13415 at 3130.101 kb on + strand, within CA264_13415 at 3130.101 kb on + strand, within CA264_13415 at 3130.101 kb on + strand, within CA264_13415 at 3130.102 kb on - strand, within CA264_13415 at 3130.102 kb on - strand, within CA264_13415 at 3130.168 kb on - strand at 3130.214 kb on - strand at 3130.221 kb on + strand at 3130.265 kb on + strand at 3130.266 kb on - strand at 3130.299 kb on + strand at 3130.299 kb on + strand at 3130.302 kb on - strand at 3130.390 kb on + strand, within CA264_13420 at 3130.391 kb on - strand, within CA264_13420 at 3130.454 kb on + strand, within CA264_13420 at 3130.504 kb on - strand at 3130.510 kb on + strand at 3130.510 kb on + strand at 3130.511 kb on - strand at 3130.513 kb on - strand at 3130.524 kb on + strand at 3130.575 kb on + strand at 3130.595 kb on + strand at 3130.622 kb on - strand at 3130.695 kb on + strand at 3130.697 kb on + strand at 3130.697 kb on + strand at 3130.698 kb on - strand at 3130.698 kb on - strand at 3130.829 kb on - strand, within CA264_13425 at 3130.888 kb on - strand, within CA264_13425 at 3130.890 kb on - strand, within CA264_13425 at 3130.890 kb on - strand, within CA264_13425 at 3130.967 kb on + strand, within CA264_13425 at 3130.967 kb on + strand, within CA264_13425 at 3130.971 kb on + strand, within CA264_13425 at 3130.997 kb on - strand, within CA264_13425 at 3131.012 kb on - strand, within CA264_13425 at 3131.088 kb on - strand, within CA264_13425 at 3131.088 kb on - strand, within CA264_13425 at 3131.158 kb on + strand, within CA264_13425 at 3131.159 kb on - strand, within CA264_13425 at 3131.159 kb on - strand, within CA264_13425
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.002 mM remove 3,128,752 - +0.2 3,128,752 - +0.2 3,128,752 - +0.9 3,128,757 + +0.6 3,128,757 + -0.2 3,128,758 - -0.4 3,128,758 - -0.0 3,128,759 + +0.4 3,128,762 + +1.1 3,128,763 - +0.6 3,128,832 - +0.5 3,128,846 - +0.4 3,128,851 - +0.8 3,128,851 - +0.6 3,128,873 + -0.1 3,128,874 - -0.4 3,128,878 - +0.2 3,128,889 + -0.9 3,128,889 - +0.1 3,128,982 - -0.8 3,128,982 - +0.6 3,129,052 - +0.8 3,129,101 - +0.0 3,129,101 - -0.5 3,129,120 + +0.4 3,129,123 + +0.3 3,129,141 - +0.8 3,129,194 - -0.2 3,129,199 - +0.2 3,129,269 + +2.1 3,129,270 - -0.8 3,129,300 - +0.4 3,129,302 - +0.1 3,129,307 - -0.3 3,129,329 + +0.1 3,129,361 - -0.0 3,129,374 + +0.1 3,129,375 - -1.4 3,129,379 - +0.3 3,129,408 + -0.8 3,129,409 - -0.3 3,129,410 + +0.5 3,129,412 + +0.4 3,129,412 + +0.6 3,129,412 + -0.5 3,129,412 + -0.0 3,129,413 - -0.8 3,129,413 - -0.5 3,129,489 - CA264_13415 0.18 -0.5 3,129,571 - CA264_13415 0.27 +0.1 3,129,626 - CA264_13415 0.33 -0.4 3,129,646 + CA264_13415 0.35 -0.6 3,129,647 - CA264_13415 0.35 -0.3 3,129,679 - CA264_13415 0.39 +0.4 3,129,894 + CA264_13415 0.63 -0.1 3,129,897 - CA264_13415 0.63 +1.1 3,130,026 - CA264_13415 0.78 -0.5 3,130,026 - CA264_13415 0.78 -0.4 3,130,101 + CA264_13415 0.86 -0.2 3,130,101 + CA264_13415 0.86 -0.3 3,130,101 + CA264_13415 0.86 +1.0 3,130,101 + CA264_13415 0.86 +0.3 3,130,102 - CA264_13415 0.86 +0.3 3,130,102 - CA264_13415 0.86 +0.1 3,130,168 - -0.4 3,130,214 - -0.4 3,130,221 + -0.1 3,130,265 + -0.5 3,130,266 - +0.1 3,130,299 + -0.6 3,130,299 + -0.3 3,130,302 - -1.0 3,130,390 + CA264_13420 0.37 -0.4 3,130,391 - CA264_13420 0.37 +0.2 3,130,454 + CA264_13420 0.71 -0.7 3,130,504 - -1.9 3,130,510 + +0.3 3,130,510 + -1.2 3,130,511 - -0.2 3,130,513 - +1.4 3,130,524 + -0.6 3,130,575 + -2.7 3,130,595 + -0.1 3,130,622 - +0.1 3,130,695 + -1.0 3,130,697 + -0.9 3,130,697 + +0.7 3,130,698 - +0.0 3,130,698 - -1.0 3,130,829 - CA264_13425 0.17 +0.4 3,130,888 - CA264_13425 0.21 -1.3 3,130,890 - CA264_13425 0.21 -0.2 3,130,890 - CA264_13425 0.21 +0.1 3,130,967 + CA264_13425 0.26 -0.7 3,130,967 + CA264_13425 0.26 -0.4 3,130,971 + CA264_13425 0.27 +0.7 3,130,997 - CA264_13425 0.28 +0.2 3,131,012 - CA264_13425 0.30 -0.2 3,131,088 - CA264_13425 0.35 -0.0 3,131,088 - CA264_13425 0.35 -0.4 3,131,158 + CA264_13425 0.40 -0.1 3,131,159 - CA264_13425 0.40 -0.2 3,131,159 - CA264_13425 0.40 -0.3
Or see this region's nucleotide sequence