Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10695

Experiment: m.b. Lomefloxacin 0.002 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10685 and CA264_10690 are separated by 15 nucleotidesCA264_10690 and CA264_10695 overlap by 8 nucleotidesCA264_10695 and CA264_10700 overlap by 11 nucleotides CA264_10685: CA264_10685 - anti-anti-sigma factor, at 2,467,499 to 2,468,371 _10685 CA264_10690: CA264_10690 - anti-anti-sigma factor, at 2,468,387 to 2,468,797 _10690 CA264_10695: CA264_10695 - anti-sigma regulatory factor, at 2,468,790 to 2,469,194 _10695 CA264_10700: CA264_10700 - stage II sporulation protein E, at 2,469,184 to 2,470,212 _10700 Position (kb) 2468 2469 2470Strain fitness (log2 ratio) -2 -1 0 1 2at 2467.850 kb on + strand, within CA264_10685at 2467.983 kb on + strand, within CA264_10685at 2467.984 kb on - strand, within CA264_10685at 2467.984 kb on - strand, within CA264_10685at 2468.079 kb on + strand, within CA264_10685at 2468.104 kb on - strand, within CA264_10685at 2468.181 kb on + strand, within CA264_10685at 2468.197 kb on + strand, within CA264_10685at 2468.212 kb on - strand, within CA264_10685at 2468.328 kb on + strandat 2468.374 kb on + strandat 2468.375 kb on - strandat 2468.375 kb on - strandat 2468.421 kb on - strandat 2468.430 kb on + strand, within CA264_10690at 2468.431 kb on - strand, within CA264_10690at 2468.448 kb on + strand, within CA264_10690at 2468.449 kb on - strand, within CA264_10690at 2468.450 kb on + strand, within CA264_10690at 2468.450 kb on + strand, within CA264_10690at 2468.451 kb on - strand, within CA264_10690at 2468.451 kb on - strand, within CA264_10690at 2468.530 kb on + strand, within CA264_10690at 2468.575 kb on - strand, within CA264_10690at 2468.578 kb on + strand, within CA264_10690at 2468.622 kb on + strand, within CA264_10690at 2468.625 kb on + strand, within CA264_10690at 2468.625 kb on + strand, within CA264_10690at 2468.686 kb on - strand, within CA264_10690at 2468.688 kb on - strand, within CA264_10690at 2468.688 kb on - strand, within CA264_10690at 2468.788 kb on + strandat 2468.789 kb on - strandat 2468.830 kb on + strandat 2468.831 kb on - strand, within CA264_10695at 2468.852 kb on - strand, within CA264_10695at 2469.133 kb on + strand, within CA264_10695at 2469.165 kb on - strandat 2469.201 kb on + strandat 2469.201 kb on + strandat 2469.201 kb on + strandat 2469.202 kb on - strandat 2469.230 kb on - strandat 2469.333 kb on + strand, within CA264_10700at 2469.334 kb on - strand, within CA264_10700at 2469.334 kb on - strand, within CA264_10700at 2469.396 kb on - strand, within CA264_10700at 2469.469 kb on + strand, within CA264_10700at 2469.639 kb on + strand, within CA264_10700at 2469.639 kb on + strand, within CA264_10700at 2469.640 kb on - strand, within CA264_10700at 2469.681 kb on - strand, within CA264_10700at 2469.698 kb on + strand, within CA264_10700at 2469.698 kb on + strand, within CA264_10700at 2469.698 kb on + strand, within CA264_10700at 2469.699 kb on - strand, within CA264_10700at 2469.699 kb on - strand, within CA264_10700at 2469.701 kb on - strand, within CA264_10700at 2469.773 kb on - strand, within CA264_10700at 2469.773 kb on - strand, within CA264_10700at 2469.863 kb on + strand, within CA264_10700at 2469.885 kb on + strand, within CA264_10700at 2469.886 kb on - strand, within CA264_10700at 2469.896 kb on - strand, within CA264_10700at 2469.929 kb on - strand, within CA264_10700at 2469.980 kb on - strand, within CA264_10700at 2469.980 kb on - strand, within CA264_10700at 2469.980 kb on - strand, within CA264_10700at 2470.059 kb on - strand, within CA264_10700at 2470.059 kb on - strand, within CA264_10700at 2470.150 kb on + strandat 2470.151 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.002 mM
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2,467,850 + CA264_10685 0.40 -0.4
2,467,983 + CA264_10685 0.55 -0.4
2,467,984 - CA264_10685 0.56 +0.4
2,467,984 - CA264_10685 0.56 -0.5
2,468,079 + CA264_10685 0.66 -0.2
2,468,104 - CA264_10685 0.69 -0.8
2,468,181 + CA264_10685 0.78 -0.4
2,468,197 + CA264_10685 0.80 -0.2
2,468,212 - CA264_10685 0.82 +2.0
2,468,328 + +0.6
2,468,374 + +0.3
2,468,375 - +0.8
2,468,375 - +1.4
2,468,421 - -0.5
2,468,430 + CA264_10690 0.10 -0.9
2,468,431 - CA264_10690 0.11 +0.2
2,468,448 + CA264_10690 0.15 +0.0
2,468,449 - CA264_10690 0.15 +0.7
2,468,450 + CA264_10690 0.15 -1.4
2,468,450 + CA264_10690 0.15 -0.2
2,468,451 - CA264_10690 0.16 -1.3
2,468,451 - CA264_10690 0.16 +1.5
2,468,530 + CA264_10690 0.35 -0.6
2,468,575 - CA264_10690 0.46 +0.4
2,468,578 + CA264_10690 0.46 +0.2
2,468,622 + CA264_10690 0.57 -0.2
2,468,625 + CA264_10690 0.58 +0.2
2,468,625 + CA264_10690 0.58 +0.2
2,468,686 - CA264_10690 0.73 -0.5
2,468,688 - CA264_10690 0.73 -0.3
2,468,688 - CA264_10690 0.73 +0.2
2,468,788 + -0.5
2,468,789 - -0.1
2,468,830 + -0.5
2,468,831 - CA264_10695 0.10 +0.6
2,468,852 - CA264_10695 0.15 +0.0
2,469,133 + CA264_10695 0.85 -0.7
2,469,165 - +1.0
2,469,201 + +0.2
2,469,201 + -0.3
2,469,201 + +0.1
2,469,202 - -0.2
2,469,230 - -0.1
2,469,333 + CA264_10700 0.14 +0.8
2,469,334 - CA264_10700 0.15 -0.7
2,469,334 - CA264_10700 0.15 +0.5
2,469,396 - CA264_10700 0.21 -0.3
2,469,469 + CA264_10700 0.28 +2.6
2,469,639 + CA264_10700 0.44 +0.2
2,469,639 + CA264_10700 0.44 -0.8
2,469,640 - CA264_10700 0.44 -0.5
2,469,681 - CA264_10700 0.48 -0.6
2,469,698 + CA264_10700 0.50 -1.2
2,469,698 + CA264_10700 0.50 +0.4
2,469,698 + CA264_10700 0.50 +0.3
2,469,699 - CA264_10700 0.50 -0.7
2,469,699 - CA264_10700 0.50 -1.0
2,469,701 - CA264_10700 0.50 -0.1
2,469,773 - CA264_10700 0.57 +0.3
2,469,773 - CA264_10700 0.57 +0.3
2,469,863 + CA264_10700 0.66 -0.4
2,469,885 + CA264_10700 0.68 -0.5
2,469,886 - CA264_10700 0.68 +0.2
2,469,896 - CA264_10700 0.69 -0.7
2,469,929 - CA264_10700 0.72 -0.8
2,469,980 - CA264_10700 0.77 -1.3
2,469,980 - CA264_10700 0.77 -0.1
2,469,980 - CA264_10700 0.77 -0.3
2,470,059 - CA264_10700 0.85 -0.4
2,470,059 - CA264_10700 0.85 -1.8
2,470,150 + -0.7
2,470,151 - +0.0

Or see this region's nucleotide sequence