Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10155

Experiment: m.b. Lomefloxacin 0.002 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10150 and CA264_10155 are separated by 9 nucleotidesCA264_10155 and CA264_10160 are separated by 917 nucleotides CA264_10150: CA264_10150 - hypothetical protein, at 2,356,186 to 2,356,497 _10150 CA264_10155: CA264_10155 - hypothetical protein, at 2,356,507 to 2,358,483 _10155 CA264_10160: CA264_10160 - STAS/SEC14 domain-containing protein, at 2,359,401 to 2,359,814 _10160 Position (kb) 2356 2357 2358 2359Strain fitness (log2 ratio) -2 -1 0 1 2at 2355.519 kb on + strandat 2355.520 kb on - strandat 2355.533 kb on + strandat 2355.534 kb on - strandat 2355.538 kb on - strandat 2355.678 kb on + strandat 2355.999 kb on + strandat 2356.055 kb on + strandat 2356.095 kb on + strandat 2356.132 kb on - strandat 2356.133 kb on + strandat 2356.134 kb on - strandat 2356.152 kb on + strandat 2356.156 kb on + strandat 2356.156 kb on + strandat 2356.156 kb on + strandat 2356.185 kb on - strandat 2356.243 kb on + strand, within CA264_10150at 2356.244 kb on - strand, within CA264_10150at 2356.264 kb on - strand, within CA264_10150at 2356.299 kb on + strand, within CA264_10150at 2356.300 kb on - strand, within CA264_10150at 2356.300 kb on - strand, within CA264_10150at 2356.310 kb on - strand, within CA264_10150at 2356.322 kb on + strand, within CA264_10150at 2356.323 kb on - strand, within CA264_10150at 2356.364 kb on + strand, within CA264_10150at 2356.365 kb on - strand, within CA264_10150at 2356.463 kb on - strand, within CA264_10150at 2356.463 kb on - strand, within CA264_10150at 2356.463 kb on - strand, within CA264_10150at 2356.490 kb on - strandat 2356.553 kb on - strandat 2356.569 kb on + strandat 2356.570 kb on - strandat 2356.573 kb on - strandat 2356.743 kb on + strand, within CA264_10155at 2356.743 kb on + strand, within CA264_10155at 2356.743 kb on + strand, within CA264_10155at 2356.954 kb on + strand, within CA264_10155at 2356.985 kb on + strand, within CA264_10155at 2356.986 kb on - strand, within CA264_10155at 2356.986 kb on - strand, within CA264_10155at 2356.987 kb on + strand, within CA264_10155at 2356.988 kb on - strand, within CA264_10155at 2356.988 kb on - strand, within CA264_10155at 2357.199 kb on + strand, within CA264_10155at 2357.211 kb on + strand, within CA264_10155at 2357.218 kb on - strand, within CA264_10155at 2357.360 kb on + strand, within CA264_10155at 2357.360 kb on + strand, within CA264_10155at 2357.361 kb on - strand, within CA264_10155at 2357.365 kb on + strand, within CA264_10155at 2357.365 kb on + strand, within CA264_10155at 2357.365 kb on + strand, within CA264_10155at 2357.383 kb on + strand, within CA264_10155at 2357.430 kb on + strand, within CA264_10155at 2357.431 kb on - strand, within CA264_10155at 2357.435 kb on - strand, within CA264_10155at 2357.435 kb on - strand, within CA264_10155at 2357.555 kb on - strand, within CA264_10155at 2357.586 kb on - strand, within CA264_10155at 2357.592 kb on - strand, within CA264_10155at 2357.621 kb on + strand, within CA264_10155at 2357.621 kb on + strand, within CA264_10155at 2357.705 kb on + strand, within CA264_10155at 2357.741 kb on + strand, within CA264_10155at 2357.741 kb on + strand, within CA264_10155at 2357.741 kb on + strand, within CA264_10155at 2357.856 kb on - strand, within CA264_10155at 2357.856 kb on - strand, within CA264_10155at 2357.857 kb on + strand, within CA264_10155at 2357.858 kb on - strand, within CA264_10155at 2357.878 kb on - strand, within CA264_10155at 2358.002 kb on + strand, within CA264_10155at 2358.002 kb on + strand, within CA264_10155at 2358.003 kb on - strand, within CA264_10155at 2358.099 kb on + strand, within CA264_10155at 2358.101 kb on + strand, within CA264_10155at 2358.101 kb on + strand, within CA264_10155at 2358.129 kb on + strand, within CA264_10155at 2358.334 kb on + strandat 2358.335 kb on - strandat 2358.335 kb on - strandat 2358.338 kb on + strandat 2358.498 kb on - strandat 2358.498 kb on - strandat 2358.512 kb on + strandat 2358.614 kb on + strandat 2358.614 kb on + strandat 2358.615 kb on - strandat 2358.617 kb on + strandat 2358.640 kb on + strandat 2358.676 kb on + strandat 2358.677 kb on - strandat 2358.683 kb on + strandat 2358.684 kb on - strandat 2358.687 kb on - strandat 2358.740 kb on - strandat 2358.743 kb on + strandat 2358.743 kb on + strandat 2358.744 kb on - strandat 2358.792 kb on - strandat 2358.816 kb on + strandat 2358.844 kb on + strandat 2358.845 kb on - strandat 2358.868 kb on - strandat 2358.869 kb on + strandat 2358.869 kb on + strandat 2358.870 kb on - strandat 2358.870 kb on - strandat 2358.886 kb on - strandat 2358.948 kb on - strandat 2358.948 kb on - strandat 2358.951 kb on + strandat 2358.952 kb on - strandat 2358.954 kb on + strandat 2359.050 kb on + strandat 2359.051 kb on - strandat 2359.065 kb on + strandat 2359.065 kb on + strandat 2359.066 kb on - strandat 2359.103 kb on - strandat 2359.122 kb on - strandat 2359.146 kb on + strandat 2359.146 kb on + strandat 2359.147 kb on - strandat 2359.149 kb on + strandat 2359.149 kb on + strandat 2359.180 kb on - strandat 2359.187 kb on - strandat 2359.188 kb on + strandat 2359.188 kb on + strandat 2359.189 kb on - strandat 2359.189 kb on - strandat 2359.190 kb on + strandat 2359.190 kb on + strandat 2359.190 kb on + strandat 2359.190 kb on + strandat 2359.191 kb on - strandat 2359.191 kb on - strandat 2359.191 kb on - strandat 2359.191 kb on - strandat 2359.191 kb on - strandat 2359.209 kb on - strandat 2359.209 kb on - strandat 2359.299 kb on - strandat 2359.352 kb on + strandat 2359.377 kb on + strandat 2359.378 kb on - strandat 2359.415 kb on + strandat 2359.421 kb on + strandat 2359.453 kb on + strand, within CA264_10160at 2359.474 kb on + strand, within CA264_10160

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.002 mM
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2,355,519 + +0.7
2,355,520 - -0.0
2,355,533 + -0.4
2,355,534 - +0.0
2,355,538 - +0.0
2,355,678 + +0.3
2,355,999 + -0.6
2,356,055 + +0.5
2,356,095 + -0.3
2,356,132 - -0.1
2,356,133 + -0.1
2,356,134 - +0.3
2,356,152 + -0.4
2,356,156 + -0.0
2,356,156 + -1.5
2,356,156 + -1.2
2,356,185 - -0.3
2,356,243 + CA264_10150 0.18 +1.1
2,356,244 - CA264_10150 0.19 +0.4
2,356,264 - CA264_10150 0.25 +1.5
2,356,299 + CA264_10150 0.36 -0.0
2,356,300 - CA264_10150 0.37 +1.3
2,356,300 - CA264_10150 0.37 +0.1
2,356,310 - CA264_10150 0.40 +0.1
2,356,322 + CA264_10150 0.44 -0.0
2,356,323 - CA264_10150 0.44 -0.5
2,356,364 + CA264_10150 0.57 -0.3
2,356,365 - CA264_10150 0.57 -0.9
2,356,463 - CA264_10150 0.89 -1.6
2,356,463 - CA264_10150 0.89 -0.4
2,356,463 - CA264_10150 0.89 -0.0
2,356,490 - -0.4
2,356,553 - +1.3
2,356,569 + -0.2
2,356,570 - -0.2
2,356,573 - +0.9
2,356,743 + CA264_10155 0.12 +0.3
2,356,743 + CA264_10155 0.12 +0.0
2,356,743 + CA264_10155 0.12 +0.3
2,356,954 + CA264_10155 0.23 +0.3
2,356,985 + CA264_10155 0.24 +0.3
2,356,986 - CA264_10155 0.24 -0.3
2,356,986 - CA264_10155 0.24 +0.1
2,356,987 + CA264_10155 0.24 -0.5
2,356,988 - CA264_10155 0.24 +0.4
2,356,988 - CA264_10155 0.24 -0.7
2,357,199 + CA264_10155 0.35 +0.2
2,357,211 + CA264_10155 0.36 +0.2
2,357,218 - CA264_10155 0.36 -0.8
2,357,360 + CA264_10155 0.43 -0.1
2,357,360 + CA264_10155 0.43 +0.1
2,357,361 - CA264_10155 0.43 +0.1
2,357,365 + CA264_10155 0.43 +0.4
2,357,365 + CA264_10155 0.43 -0.8
2,357,365 + CA264_10155 0.43 -1.4
2,357,383 + CA264_10155 0.44 -0.4
2,357,430 + CA264_10155 0.47 -0.2
2,357,431 - CA264_10155 0.47 +0.2
2,357,435 - CA264_10155 0.47 -0.1
2,357,435 - CA264_10155 0.47 +0.2
2,357,555 - CA264_10155 0.53 -0.4
2,357,586 - CA264_10155 0.55 -0.1
2,357,592 - CA264_10155 0.55 -0.5
2,357,621 + CA264_10155 0.56 +0.0
2,357,621 + CA264_10155 0.56 +0.3
2,357,705 + CA264_10155 0.61 -0.1
2,357,741 + CA264_10155 0.62 +0.3
2,357,741 + CA264_10155 0.62 -0.8
2,357,741 + CA264_10155 0.62 -0.9
2,357,856 - CA264_10155 0.68 +0.5
2,357,856 - CA264_10155 0.68 +0.4
2,357,857 + CA264_10155 0.68 +0.3
2,357,858 - CA264_10155 0.68 -0.5
2,357,878 - CA264_10155 0.69 +0.3
2,358,002 + CA264_10155 0.76 +0.3
2,358,002 + CA264_10155 0.76 -0.3
2,358,003 - CA264_10155 0.76 +1.1
2,358,099 + CA264_10155 0.81 +1.2
2,358,101 + CA264_10155 0.81 +0.3
2,358,101 + CA264_10155 0.81 -0.8
2,358,129 + CA264_10155 0.82 -1.1
2,358,334 + -1.4
2,358,335 - -0.5
2,358,335 - +0.0
2,358,338 + -0.5
2,358,498 - +0.5
2,358,498 - +0.2
2,358,512 + +0.3
2,358,614 + -0.3
2,358,614 + +0.8
2,358,615 - -0.9
2,358,617 + +0.3
2,358,640 + -0.1
2,358,676 + +0.5
2,358,677 - +0.8
2,358,683 + +1.0
2,358,684 - -0.7
2,358,687 - +0.1
2,358,740 - -0.2
2,358,743 + +0.3
2,358,743 + -0.1
2,358,744 - -1.8
2,358,792 - -0.1
2,358,816 + -0.3
2,358,844 + -0.6
2,358,845 - -0.1
2,358,868 - -0.6
2,358,869 + -0.5
2,358,869 + +0.1
2,358,870 - -0.1
2,358,870 - +0.5
2,358,886 - -0.7
2,358,948 - +0.7
2,358,948 - -0.7
2,358,951 + +0.1
2,358,952 - +0.3
2,358,954 + +0.2
2,359,050 + -1.0
2,359,051 - +0.9
2,359,065 + -1.0
2,359,065 + -0.4
2,359,066 - +0.5
2,359,103 - +0.1
2,359,122 - +0.3
2,359,146 + -0.3
2,359,146 + +2.6
2,359,147 - +0.0
2,359,149 + +0.4
2,359,149 + +1.0
2,359,180 - -0.4
2,359,187 - -0.3
2,359,188 + +0.2
2,359,188 + +0.5
2,359,189 - +0.2
2,359,189 - +1.2
2,359,190 + -1.5
2,359,190 + +0.7
2,359,190 + -0.1
2,359,190 + -0.0
2,359,191 - +0.6
2,359,191 - +0.5
2,359,191 - +0.9
2,359,191 - +0.3
2,359,191 - +1.0
2,359,209 - +0.2
2,359,209 - +0.3
2,359,299 - -1.1
2,359,352 + -0.3
2,359,377 + +0.6
2,359,378 - +0.8
2,359,415 + -0.3
2,359,421 + -0.4
2,359,453 + CA264_10160 0.13 -1.3
2,359,474 + CA264_10160 0.18 -1.0

Or see this region's nucleotide sequence