Experiment: m.b. Lomefloxacin 0.002 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_07765 and CA264_07770 are separated by 104 nucleotides CA264_07770 and CA264_07775 are separated by 1 nucleotides CA264_07775 and CA264_07780 are separated by 128 nucleotides CA264_07780 and CA264_07785 are separated by 45 nucleotides
CA264_07765: CA264_07765 - hypothetical protein, at 1,798,571 to 1,799,407
_07765
CA264_07770: CA264_07770 - hypothetical protein, at 1,799,512 to 1,800,936
_07770
CA264_07775: CA264_07775 - transcriptional regulator, at 1,800,938 to 1,801,303
_07775
CA264_07780: CA264_07780 - hypothetical protein, at 1,801,432 to 1,801,839
_07780
CA264_07785: CA264_07785 - hypothetical protein, at 1,801,885 to 1,802,451
_07785
Position (kb)
1799
1800
1801 Strain fitness (log2 ratio)
-2
-1
0
1 at 1798.555 kb on - strand at 1798.556 kb on + strand at 1798.590 kb on + strand at 1798.590 kb on + strand at 1798.611 kb on + strand at 1798.650 kb on + strand at 1798.650 kb on + strand at 1798.651 kb on - strand at 1798.692 kb on - strand, within CA264_07765 at 1798.700 kb on + strand, within CA264_07765 at 1798.735 kb on + strand, within CA264_07765 at 1798.814 kb on + strand, within CA264_07765 at 1798.814 kb on + strand, within CA264_07765 at 1798.815 kb on - strand, within CA264_07765 at 1798.874 kb on - strand, within CA264_07765 at 1798.874 kb on - strand, within CA264_07765 at 1798.928 kb on + strand, within CA264_07765 at 1798.957 kb on + strand, within CA264_07765 at 1798.983 kb on + strand, within CA264_07765 at 1799.015 kb on + strand, within CA264_07765 at 1799.117 kb on + strand, within CA264_07765 at 1799.165 kb on + strand, within CA264_07765 at 1799.239 kb on - strand, within CA264_07765 at 1799.263 kb on + strand, within CA264_07765 at 1799.264 kb on - strand, within CA264_07765 at 1799.399 kb on + strand at 1799.400 kb on - strand at 1799.401 kb on + strand at 1799.438 kb on - strand at 1799.447 kb on - strand at 1799.513 kb on + strand at 1799.566 kb on + strand at 1799.758 kb on - strand, within CA264_07770 at 1799.833 kb on + strand, within CA264_07770 at 1799.834 kb on - strand, within CA264_07770 at 1799.848 kb on + strand, within CA264_07770 at 1799.955 kb on - strand, within CA264_07770 at 1799.959 kb on + strand, within CA264_07770 at 1799.960 kb on - strand, within CA264_07770 at 1800.000 kb on + strand, within CA264_07770 at 1800.000 kb on + strand, within CA264_07770 at 1800.001 kb on - strand, within CA264_07770 at 1800.001 kb on - strand, within CA264_07770 at 1800.101 kb on - strand, within CA264_07770 at 1800.128 kb on + strand, within CA264_07770 at 1800.257 kb on + strand, within CA264_07770 at 1800.331 kb on - strand, within CA264_07770 at 1800.668 kb on + strand, within CA264_07770 at 1800.683 kb on - strand, within CA264_07770 at 1800.725 kb on - strand, within CA264_07770 at 1800.733 kb on + strand, within CA264_07770 at 1800.733 kb on + strand, within CA264_07770 at 1800.842 kb on + strand at 1800.859 kb on + strand at 1800.872 kb on + strand at 1800.873 kb on - strand at 1800.881 kb on + strand at 1800.881 kb on + strand at 1800.882 kb on - strand at 1800.882 kb on - strand at 1800.887 kb on - strand at 1800.981 kb on - strand, within CA264_07775 at 1801.051 kb on - strand, within CA264_07775 at 1801.072 kb on + strand, within CA264_07775 at 1801.120 kb on - strand, within CA264_07775 at 1801.450 kb on + strand at 1801.561 kb on + strand, within CA264_07780 at 1801.561 kb on + strand, within CA264_07780 at 1801.561 kb on + strand, within CA264_07780 at 1801.562 kb on - strand, within CA264_07780 at 1801.565 kb on - strand, within CA264_07780 at 1801.747 kb on + strand, within CA264_07780 at 1801.748 kb on - strand, within CA264_07780 at 1801.774 kb on + strand, within CA264_07780 at 1801.820 kb on + strand at 1801.820 kb on + strand at 1801.874 kb on - strand at 1801.879 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.002 mM remove 1,798,555 - -0.9 1,798,556 + -0.1 1,798,590 + +0.3 1,798,590 + -0.0 1,798,611 + +0.1 1,798,650 + +0.1 1,798,650 + +0.5 1,798,651 - -0.3 1,798,692 - CA264_07765 0.14 -1.5 1,798,700 + CA264_07765 0.15 -0.8 1,798,735 + CA264_07765 0.20 +0.8 1,798,814 + CA264_07765 0.29 -0.3 1,798,814 + CA264_07765 0.29 +0.6 1,798,815 - CA264_07765 0.29 -0.5 1,798,874 - CA264_07765 0.36 -0.4 1,798,874 - CA264_07765 0.36 +0.0 1,798,928 + CA264_07765 0.43 -0.1 1,798,957 + CA264_07765 0.46 +0.6 1,798,983 + CA264_07765 0.49 -0.2 1,799,015 + CA264_07765 0.53 +0.5 1,799,117 + CA264_07765 0.65 +0.1 1,799,165 + CA264_07765 0.71 -0.5 1,799,239 - CA264_07765 0.80 -0.5 1,799,263 + CA264_07765 0.83 +0.0 1,799,264 - CA264_07765 0.83 -0.6 1,799,399 + -0.1 1,799,400 - -0.2 1,799,401 + -1.1 1,799,438 - -0.6 1,799,447 - -0.5 1,799,513 + +0.1 1,799,566 + +0.5 1,799,758 - CA264_07770 0.17 +0.5 1,799,833 + CA264_07770 0.23 -0.2 1,799,834 - CA264_07770 0.23 +0.0 1,799,848 + CA264_07770 0.24 -1.1 1,799,955 - CA264_07770 0.31 -0.8 1,799,959 + CA264_07770 0.31 -0.5 1,799,960 - CA264_07770 0.31 -0.1 1,800,000 + CA264_07770 0.34 -1.7 1,800,000 + CA264_07770 0.34 -0.4 1,800,001 - CA264_07770 0.34 -1.8 1,800,001 - CA264_07770 0.34 -1.0 1,800,101 - CA264_07770 0.41 -0.7 1,800,128 + CA264_07770 0.43 -0.5 1,800,257 + CA264_07770 0.52 -1.2 1,800,331 - CA264_07770 0.57 +0.9 1,800,668 + CA264_07770 0.81 +0.1 1,800,683 - CA264_07770 0.82 -0.1 1,800,725 - CA264_07770 0.85 +1.0 1,800,733 + CA264_07770 0.86 -0.4 1,800,733 + CA264_07770 0.86 +0.0 1,800,842 + -0.4 1,800,859 + -0.2 1,800,872 + +0.0 1,800,873 - +0.8 1,800,881 + +0.1 1,800,881 + +0.3 1,800,882 - +0.1 1,800,882 - -1.6 1,800,887 - -1.1 1,800,981 - CA264_07775 0.12 -1.0 1,801,051 - CA264_07775 0.31 -1.6 1,801,072 + CA264_07775 0.37 +0.0 1,801,120 - CA264_07775 0.50 -0.4 1,801,450 + -0.1 1,801,561 + CA264_07780 0.32 -0.1 1,801,561 + CA264_07780 0.32 +0.5 1,801,561 + CA264_07780 0.32 +0.3 1,801,562 - CA264_07780 0.32 +0.4 1,801,565 - CA264_07780 0.33 -0.4 1,801,747 + CA264_07780 0.77 -0.8 1,801,748 - CA264_07780 0.77 -0.5 1,801,774 + CA264_07780 0.84 -1.1 1,801,820 + +0.6 1,801,820 + -0.3 1,801,874 - -0.1 1,801,879 + -0.5
Or see this region's nucleotide sequence