Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07530

Experiment: m.b. Lomefloxacin 0.002 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07525 and CA264_07530 are separated by 394 nucleotidesCA264_07530 and CA264_07535 overlap by 11 nucleotides CA264_07525: CA264_07525 - hypothetical protein, at 1,742,184 to 1,743,212 _07525 CA264_07530: CA264_07530 - ATP-binding protein, at 1,743,607 to 1,744,962 _07530 CA264_07535: CA264_07535 - sigma-54-dependent Fis family transcriptional regulator, at 1,744,952 to 1,746,337 _07535 Position (kb) 1743 1744 1745Strain fitness (log2 ratio) -2 -1 0 1 2at 1742.615 kb on - strand, within CA264_07525at 1742.652 kb on + strand, within CA264_07525at 1742.653 kb on - strand, within CA264_07525at 1742.653 kb on - strand, within CA264_07525at 1742.678 kb on + strand, within CA264_07525at 1742.690 kb on - strand, within CA264_07525at 1742.692 kb on + strand, within CA264_07525at 1742.693 kb on - strand, within CA264_07525at 1742.711 kb on + strand, within CA264_07525at 1742.711 kb on + strand, within CA264_07525at 1742.899 kb on + strand, within CA264_07525at 1742.926 kb on + strand, within CA264_07525at 1742.927 kb on - strand, within CA264_07525at 1742.927 kb on - strand, within CA264_07525at 1742.927 kb on - strand, within CA264_07525at 1742.996 kb on - strand, within CA264_07525at 1743.049 kb on + strand, within CA264_07525at 1743.050 kb on - strand, within CA264_07525at 1743.091 kb on + strand, within CA264_07525at 1743.092 kb on - strand, within CA264_07525at 1743.118 kb on + strandat 1743.119 kb on - strandat 1743.152 kb on - strandat 1743.233 kb on - strandat 1743.233 kb on - strandat 1743.320 kb on + strandat 1743.320 kb on + strandat 1743.346 kb on + strandat 1743.413 kb on - strandat 1743.414 kb on + strandat 1743.414 kb on + strandat 1743.415 kb on - strandat 1743.454 kb on + strandat 1743.495 kb on + strandat 1743.496 kb on - strandat 1743.511 kb on + strandat 1743.511 kb on + strandat 1743.511 kb on + strandat 1743.512 kb on - strandat 1743.549 kb on + strandat 1743.550 kb on - strandat 1743.598 kb on - strandat 1743.726 kb on + strandat 1743.726 kb on + strandat 1743.748 kb on + strand, within CA264_07530at 1743.749 kb on - strand, within CA264_07530at 1743.749 kb on - strand, within CA264_07530at 1743.886 kb on + strand, within CA264_07530at 1743.894 kb on + strand, within CA264_07530at 1743.895 kb on - strand, within CA264_07530at 1743.895 kb on - strand, within CA264_07530at 1744.018 kb on + strand, within CA264_07530at 1744.060 kb on + strand, within CA264_07530at 1744.061 kb on - strand, within CA264_07530at 1744.061 kb on - strand, within CA264_07530at 1744.194 kb on + strand, within CA264_07530at 1744.195 kb on - strand, within CA264_07530at 1744.197 kb on - strand, within CA264_07530at 1744.257 kb on + strand, within CA264_07530at 1744.328 kb on - strand, within CA264_07530at 1744.328 kb on - strand, within CA264_07530at 1744.328 kb on - strand, within CA264_07530at 1744.328 kb on - strand, within CA264_07530at 1744.549 kb on - strand, within CA264_07530at 1744.623 kb on - strand, within CA264_07530at 1744.751 kb on + strand, within CA264_07530at 1744.751 kb on + strand, within CA264_07530at 1744.752 kb on - strand, within CA264_07530at 1744.752 kb on - strand, within CA264_07530at 1744.755 kb on + strand, within CA264_07530at 1744.755 kb on + strand, within CA264_07530at 1744.755 kb on + strand, within CA264_07530at 1744.756 kb on - strand, within CA264_07530at 1744.756 kb on - strand, within CA264_07530at 1744.778 kb on + strand, within CA264_07530at 1744.779 kb on - strand, within CA264_07530at 1744.779 kb on - strand, within CA264_07530at 1744.844 kb on - strandat 1744.963 kb on - strandat 1745.025 kb on - strandat 1745.235 kb on + strand, within CA264_07535at 1745.236 kb on - strand, within CA264_07535at 1745.236 kb on - strand, within CA264_07535at 1745.295 kb on - strand, within CA264_07535at 1745.303 kb on + strand, within CA264_07535at 1745.304 kb on - strand, within CA264_07535at 1745.304 kb on - strand, within CA264_07535at 1745.304 kb on - strand, within CA264_07535at 1745.504 kb on + strand, within CA264_07535at 1745.504 kb on + strand, within CA264_07535at 1745.505 kb on - strand, within CA264_07535at 1745.703 kb on - strand, within CA264_07535at 1745.822 kb on - strand, within CA264_07535at 1745.822 kb on - strand, within CA264_07535at 1745.825 kb on + strand, within CA264_07535at 1745.825 kb on + strand, within CA264_07535at 1745.825 kb on + strand, within CA264_07535at 1745.826 kb on - strand, within CA264_07535at 1745.830 kb on + strand, within CA264_07535at 1745.848 kb on + strand, within CA264_07535at 1745.849 kb on - strand, within CA264_07535at 1745.940 kb on + strand, within CA264_07535at 1745.941 kb on - strand, within CA264_07535

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.002 mM
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1,742,615 - CA264_07525 0.42 -0.4
1,742,652 + CA264_07525 0.45 -0.7
1,742,653 - CA264_07525 0.46 +0.9
1,742,653 - CA264_07525 0.46 -0.3
1,742,678 + CA264_07525 0.48 -0.3
1,742,690 - CA264_07525 0.49 -0.6
1,742,692 + CA264_07525 0.49 +0.2
1,742,693 - CA264_07525 0.49 +0.4
1,742,711 + CA264_07525 0.51 -0.4
1,742,711 + CA264_07525 0.51 -0.2
1,742,899 + CA264_07525 0.69 -0.2
1,742,926 + CA264_07525 0.72 -1.5
1,742,927 - CA264_07525 0.72 +1.0
1,742,927 - CA264_07525 0.72 +0.9
1,742,927 - CA264_07525 0.72 -0.7
1,742,996 - CA264_07525 0.79 +0.2
1,743,049 + CA264_07525 0.84 -0.1
1,743,050 - CA264_07525 0.84 +0.1
1,743,091 + CA264_07525 0.88 +0.5
1,743,092 - CA264_07525 0.88 +0.8
1,743,118 + -1.3
1,743,119 - -0.5
1,743,152 - -0.6
1,743,233 - +0.2
1,743,233 - +0.8
1,743,320 + -0.0
1,743,320 + -1.3
1,743,346 + +0.1
1,743,413 - +0.7
1,743,414 + +0.6
1,743,414 + -0.2
1,743,415 - -0.1
1,743,454 + +0.1
1,743,495 + +0.2
1,743,496 - +1.0
1,743,511 + -1.0
1,743,511 + -0.1
1,743,511 + +0.3
1,743,512 - +0.2
1,743,549 + +0.3
1,743,550 - +0.6
1,743,598 - +0.2
1,743,726 + +2.0
1,743,726 + -0.8
1,743,748 + CA264_07530 0.10 +1.2
1,743,749 - CA264_07530 0.10 +0.5
1,743,749 - CA264_07530 0.10 -0.5
1,743,886 + CA264_07530 0.21 -0.2
1,743,894 + CA264_07530 0.21 -0.3
1,743,895 - CA264_07530 0.21 -0.4
1,743,895 - CA264_07530 0.21 -1.4
1,744,018 + CA264_07530 0.30 +0.0
1,744,060 + CA264_07530 0.33 -0.1
1,744,061 - CA264_07530 0.33 -0.9
1,744,061 - CA264_07530 0.33 -0.6
1,744,194 + CA264_07530 0.43 -0.6
1,744,195 - CA264_07530 0.43 -1.2
1,744,197 - CA264_07530 0.44 -0.7
1,744,257 + CA264_07530 0.48 -1.5
1,744,328 - CA264_07530 0.53 -1.0
1,744,328 - CA264_07530 0.53 -0.4
1,744,328 - CA264_07530 0.53 -0.1
1,744,328 - CA264_07530 0.53 -0.2
1,744,549 - CA264_07530 0.69 +2.2
1,744,623 - CA264_07530 0.75 +0.0
1,744,751 + CA264_07530 0.84 -1.9
1,744,751 + CA264_07530 0.84 +0.4
1,744,752 - CA264_07530 0.84 +1.9
1,744,752 - CA264_07530 0.84 -0.5
1,744,755 + CA264_07530 0.85 +0.6
1,744,755 + CA264_07530 0.85 -0.6
1,744,755 + CA264_07530 0.85 +0.0
1,744,756 - CA264_07530 0.85 -0.6
1,744,756 - CA264_07530 0.85 -2.0
1,744,778 + CA264_07530 0.86 -0.9
1,744,779 - CA264_07530 0.86 -0.2
1,744,779 - CA264_07530 0.86 +0.5
1,744,844 - -0.2
1,744,963 - -1.6
1,745,025 - -1.0
1,745,235 + CA264_07535 0.20 +0.2
1,745,236 - CA264_07535 0.20 -0.2
1,745,236 - CA264_07535 0.20 -0.3
1,745,295 - CA264_07535 0.25 -1.4
1,745,303 + CA264_07535 0.25 +1.3
1,745,304 - CA264_07535 0.25 +0.1
1,745,304 - CA264_07535 0.25 +0.3
1,745,304 - CA264_07535 0.25 +1.0
1,745,504 + CA264_07535 0.40 +0.3
1,745,504 + CA264_07535 0.40 +1.0
1,745,505 - CA264_07535 0.40 -0.0
1,745,703 - CA264_07535 0.54 -0.3
1,745,822 - CA264_07535 0.63 -0.7
1,745,822 - CA264_07535 0.63 +0.8
1,745,825 + CA264_07535 0.63 +1.0
1,745,825 + CA264_07535 0.63 -0.0
1,745,825 + CA264_07535 0.63 -1.8
1,745,826 - CA264_07535 0.63 -0.3
1,745,830 + CA264_07535 0.63 -0.2
1,745,848 + CA264_07535 0.65 -0.3
1,745,849 - CA264_07535 0.65 +0.6
1,745,940 + CA264_07535 0.71 -0.0
1,745,941 - CA264_07535 0.71 -0.3

Or see this region's nucleotide sequence