Experiment: m.b. Lomefloxacin 0.002 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_04455 and CA264_04460 are separated by 97 nucleotides CA264_04460 and CA264_04465 are separated by 89 nucleotides
CA264_04455: CA264_04455 - hypothetical protein, at 1,030,457 to 1,031,698
_04455
CA264_04460: CA264_04460 - ABC transporter, at 1,031,796 to 1,032,272
_04460
CA264_04465: CA264_04465 - alpha/beta hydrolase, at 1,032,362 to 1,033,198
_04465
Position (kb)
1031
1032
1033 Strain fitness (log2 ratio)
-1
0
1
2 at 1030.802 kb on + strand, within CA264_04455 at 1030.802 kb on + strand, within CA264_04455 at 1030.802 kb on + strand, within CA264_04455 at 1030.802 kb on + strand, within CA264_04455 at 1030.802 kb on + strand, within CA264_04455 at 1030.803 kb on - strand, within CA264_04455 at 1030.803 kb on - strand, within CA264_04455 at 1030.803 kb on - strand, within CA264_04455 at 1030.809 kb on - strand, within CA264_04455 at 1030.879 kb on + strand, within CA264_04455 at 1030.974 kb on - strand, within CA264_04455 at 1030.979 kb on - strand, within CA264_04455 at 1030.979 kb on - strand, within CA264_04455 at 1030.993 kb on - strand, within CA264_04455 at 1031.009 kb on + strand, within CA264_04455 at 1031.040 kb on + strand, within CA264_04455 at 1031.040 kb on + strand, within CA264_04455 at 1031.041 kb on - strand, within CA264_04455 at 1031.131 kb on + strand, within CA264_04455 at 1031.215 kb on - strand, within CA264_04455 at 1031.221 kb on + strand, within CA264_04455 at 1031.222 kb on - strand, within CA264_04455 at 1031.310 kb on - strand, within CA264_04455 at 1031.312 kb on + strand, within CA264_04455 at 1031.312 kb on + strand at 1031.340 kb on - strand, within CA264_04455 at 1031.379 kb on - strand, within CA264_04455 at 1031.402 kb on - strand, within CA264_04455 at 1031.540 kb on - strand, within CA264_04455 at 1031.616 kb on - strand at 1031.798 kb on - strand at 1031.798 kb on - strand at 1031.829 kb on + strand at 1032.062 kb on + strand, within CA264_04460 at 1032.063 kb on - strand, within CA264_04460 at 1032.065 kb on - strand, within CA264_04460 at 1032.231 kb on - strand at 1032.237 kb on + strand at 1032.252 kb on + strand at 1032.253 kb on - strand at 1032.279 kb on + strand at 1032.284 kb on + strand at 1032.289 kb on - strand at 1032.359 kb on + strand at 1032.360 kb on - strand at 1032.363 kb on + strand at 1032.363 kb on + strand at 1032.364 kb on - strand at 1032.364 kb on - strand at 1032.406 kb on + strand at 1032.406 kb on + strand at 1032.407 kb on - strand at 1032.450 kb on + strand, within CA264_04465 at 1032.527 kb on + strand, within CA264_04465 at 1032.527 kb on + strand, within CA264_04465 at 1032.527 kb on + strand, within CA264_04465 at 1032.527 kb on + strand, within CA264_04465 at 1032.527 kb on + strand, within CA264_04465 at 1032.527 kb on + strand, within CA264_04465 at 1032.528 kb on - strand, within CA264_04465 at 1032.528 kb on - strand, within CA264_04465 at 1032.528 kb on - strand, within CA264_04465 at 1032.530 kb on - strand, within CA264_04465 at 1032.549 kb on - strand, within CA264_04465 at 1032.646 kb on - strand, within CA264_04465 at 1032.666 kb on - strand, within CA264_04465 at 1032.688 kb on - strand, within CA264_04465 at 1032.694 kb on - strand, within CA264_04465 at 1032.873 kb on + strand, within CA264_04465 at 1032.874 kb on - strand, within CA264_04465 at 1032.874 kb on - strand, within CA264_04465 at 1032.942 kb on - strand, within CA264_04465 at 1032.975 kb on + strand, within CA264_04465 at 1032.976 kb on - strand, within CA264_04465 at 1032.976 kb on - strand, within CA264_04465 at 1032.981 kb on + strand, within CA264_04465 at 1032.987 kb on + strand, within CA264_04465 at 1033.082 kb on - strand, within CA264_04465 at 1033.144 kb on - strand at 1033.152 kb on + strand at 1033.204 kb on - strand at 1033.223 kb on + strand at 1033.223 kb on + strand at 1033.224 kb on - strand at 1033.226 kb on - strand at 1033.239 kb on + strand at 1033.239 kb on + strand at 1033.240 kb on - strand at 1033.272 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.002 mM remove 1,030,802 + CA264_04455 0.28 +0.3 1,030,802 + CA264_04455 0.28 -0.0 1,030,802 + CA264_04455 0.28 +0.5 1,030,802 + CA264_04455 0.28 -0.2 1,030,802 + CA264_04455 0.28 +0.3 1,030,803 - CA264_04455 0.28 -1.4 1,030,803 - CA264_04455 0.28 -0.3 1,030,803 - CA264_04455 0.28 +0.1 1,030,809 - CA264_04455 0.28 +0.9 1,030,879 + CA264_04455 0.34 +0.7 1,030,974 - CA264_04455 0.42 -0.1 1,030,979 - CA264_04455 0.42 +0.4 1,030,979 - CA264_04455 0.42 -0.1 1,030,993 - CA264_04455 0.43 -0.4 1,031,009 + CA264_04455 0.44 +0.1 1,031,040 + CA264_04455 0.47 -0.7 1,031,040 + CA264_04455 0.47 +2.3 1,031,041 - CA264_04455 0.47 -0.2 1,031,131 + CA264_04455 0.54 -0.4 1,031,215 - CA264_04455 0.61 -0.2 1,031,221 + CA264_04455 0.62 -0.2 1,031,222 - CA264_04455 0.62 -0.1 1,031,310 - CA264_04455 0.69 -0.1 1,031,312 + CA264_04455 0.69 -0.1 1,031,312 + +0.3 1,031,340 - CA264_04455 0.71 +0.4 1,031,379 - CA264_04455 0.74 -0.2 1,031,402 - CA264_04455 0.76 +1.1 1,031,540 - CA264_04455 0.87 -0.5 1,031,616 - -0.2 1,031,798 - -0.2 1,031,798 - -0.3 1,031,829 + +0.1 1,032,062 + CA264_04460 0.56 +0.3 1,032,063 - CA264_04460 0.56 +0.3 1,032,065 - CA264_04460 0.56 +1.2 1,032,231 - +0.7 1,032,237 + +0.3 1,032,252 + +0.2 1,032,253 - +0.7 1,032,279 + -0.1 1,032,284 + +0.2 1,032,289 - -0.5 1,032,359 + -0.1 1,032,360 - -0.1 1,032,363 + -0.0 1,032,363 + -0.5 1,032,364 - -1.3 1,032,364 - -0.4 1,032,406 + -1.1 1,032,406 + -0.7 1,032,407 - -1.5 1,032,450 + CA264_04465 0.11 +0.3 1,032,527 + CA264_04465 0.20 +0.8 1,032,527 + CA264_04465 0.20 -0.3 1,032,527 + CA264_04465 0.20 -0.6 1,032,527 + CA264_04465 0.20 -0.3 1,032,527 + CA264_04465 0.20 +0.0 1,032,527 + CA264_04465 0.20 +0.8 1,032,528 - CA264_04465 0.20 -0.3 1,032,528 - CA264_04465 0.20 +0.0 1,032,528 - CA264_04465 0.20 +1.2 1,032,530 - CA264_04465 0.20 -0.7 1,032,549 - CA264_04465 0.22 +0.1 1,032,646 - CA264_04465 0.34 +0.6 1,032,666 - CA264_04465 0.36 -0.2 1,032,688 - CA264_04465 0.39 +1.0 1,032,694 - CA264_04465 0.40 -0.0 1,032,873 + CA264_04465 0.61 -0.4 1,032,874 - CA264_04465 0.61 -0.3 1,032,874 - CA264_04465 0.61 -0.5 1,032,942 - CA264_04465 0.69 +0.5 1,032,975 + CA264_04465 0.73 +0.4 1,032,976 - CA264_04465 0.73 +0.4 1,032,976 - CA264_04465 0.73 -0.3 1,032,981 + CA264_04465 0.74 -0.4 1,032,987 + CA264_04465 0.75 +0.7 1,033,082 - CA264_04465 0.86 +0.7 1,033,144 - +0.3 1,033,152 + +0.5 1,033,204 - -0.2 1,033,223 + -1.2 1,033,223 + -0.8 1,033,224 - +0.7 1,033,226 - +0.6 1,033,239 + -0.9 1,033,239 + -0.2 1,033,240 - -0.3 1,033,272 + -0.3
Or see this region's nucleotide sequence