Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00300

Experiment: m.b. Lomefloxacin 0.002 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00290 and CA264_00295 are separated by 95 nucleotidesCA264_00295 and CA264_00300 are separated by 176 nucleotidesCA264_00300 and CA264_00305 are separated by 54 nucleotidesCA264_00305 and CA264_00310 are separated by 97 nucleotides CA264_00290: CA264_00290 - acyl-ACP desaturase, at 68,977 to 69,957 _00290 CA264_00295: CA264_00295 - hypothetical protein, at 70,053 to 70,334 _00295 CA264_00300: CA264_00300 - VWA domain-containing protein, at 70,511 to 71,611 _00300 CA264_00305: CA264_00305 - hypothetical protein, at 71,666 to 72,139 _00305 CA264_00310: CA264_00310 - magnesium chelatase, at 72,237 to 73,754 _00310 Position (kb) 70 71 72Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 69.982 kb on + strandat 69.982 kb on + strandat 69.982 kb on + strandat 69.982 kb on + strandat 69.982 kb on + strandat 69.983 kb on - strandat 69.983 kb on - strandat 69.983 kb on - strandat 70.006 kb on + strandat 70.007 kb on - strandat 70.008 kb on + strandat 70.008 kb on + strandat 70.008 kb on + strandat 70.009 kb on - strandat 70.009 kb on - strandat 70.009 kb on - strandat 70.015 kb on + strandat 70.055 kb on - strandat 70.091 kb on - strand, within CA264_00295at 70.097 kb on + strand, within CA264_00295at 70.177 kb on + strand, within CA264_00295at 70.180 kb on + strand, within CA264_00295at 70.180 kb on + strand, within CA264_00295at 70.181 kb on - strand, within CA264_00295at 70.308 kb on + strandat 70.308 kb on + strandat 70.360 kb on + strandat 70.360 kb on + strandat 70.360 kb on + strandat 70.361 kb on - strandat 70.361 kb on - strandat 70.361 kb on - strandat 70.361 kb on - strandat 70.365 kb on + strandat 70.366 kb on - strandat 70.366 kb on - strandat 70.366 kb on - strandat 70.395 kb on + strandat 70.396 kb on - strandat 70.497 kb on + strandat 70.497 kb on + strandat 70.510 kb on + strandat 70.518 kb on + strandat 70.518 kb on + strandat 70.519 kb on - strandat 70.519 kb on - strandat 70.558 kb on + strandat 70.559 kb on - strandat 70.592 kb on - strandat 71.374 kb on + strand, within CA264_00300at 71.375 kb on - strand, within CA264_00300at 71.375 kb on - strand, within CA264_00300at 71.688 kb on + strandat 71.688 kb on + strandat 71.751 kb on - strand, within CA264_00305at 71.813 kb on - strand, within CA264_00305at 71.817 kb on - strand, within CA264_00305at 71.817 kb on - strand, within CA264_00305at 71.923 kb on + strand, within CA264_00305at 71.925 kb on + strand, within CA264_00305at 71.926 kb on - strand, within CA264_00305at 71.957 kb on + strand, within CA264_00305at 71.992 kb on - strand, within CA264_00305at 71.992 kb on - strand, within CA264_00305at 71.996 kb on + strand, within CA264_00305at 71.997 kb on - strand, within CA264_00305at 71.998 kb on + strand, within CA264_00305at 71.999 kb on - strand, within CA264_00305at 71.999 kb on - strand, within CA264_00305at 72.052 kb on - strand, within CA264_00305at 72.185 kb on + strandat 72.234 kb on + strandat 72.244 kb on - strandat 72.278 kb on - strandat 72.296 kb on - strandat 72.325 kb on + strandat 72.326 kb on - strandat 72.436 kb on + strand, within CA264_00310at 72.436 kb on + strand, within CA264_00310at 72.436 kb on + strand, within CA264_00310at 72.508 kb on + strand, within CA264_00310at 72.525 kb on + strand, within CA264_00310at 72.526 kb on - strand, within CA264_00310at 72.526 kb on - strand, within CA264_00310at 72.526 kb on - strand, within CA264_00310at 72.526 kb on - strand, within CA264_00310at 72.526 kb on - strand, within CA264_00310at 72.527 kb on + strand, within CA264_00310at 72.528 kb on - strand, within CA264_00310at 72.528 kb on - strand, within CA264_00310

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.002 mM
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69,982 + +0.7
69,982 + +0.4
69,982 + +0.2
69,982 + -0.2
69,982 + -0.6
69,983 - -1.0
69,983 - +0.2
69,983 - -0.9
70,006 + -0.6
70,007 - -0.8
70,008 + -0.2
70,008 + -0.7
70,008 + +0.1
70,009 - -0.7
70,009 - -0.2
70,009 - -0.2
70,015 + -0.5
70,055 - +0.5
70,091 - CA264_00295 0.13 -0.3
70,097 + CA264_00295 0.16 -0.1
70,177 + CA264_00295 0.44 +0.2
70,180 + CA264_00295 0.45 +0.0
70,180 + CA264_00295 0.45 -0.9
70,181 - CA264_00295 0.45 +0.1
70,308 + +0.4
70,308 + +0.1
70,360 + +0.9
70,360 + -0.8
70,360 + -0.1
70,361 - +1.0
70,361 - +1.0
70,361 - -0.4
70,361 - -0.9
70,365 + -0.5
70,366 - -0.5
70,366 - +0.9
70,366 - +0.4
70,395 + -0.3
70,396 - +0.0
70,497 + -0.8
70,497 + -1.3
70,510 + -0.4
70,518 + +1.1
70,518 + -1.0
70,519 - -1.0
70,519 - +0.4
70,558 + -3.3
70,559 - +1.6
70,592 - -0.0
71,374 + CA264_00300 0.78 -0.1
71,375 - CA264_00300 0.78 -0.6
71,375 - CA264_00300 0.78 -0.1
71,688 + -0.4
71,688 + -0.8
71,751 - CA264_00305 0.18 +0.4
71,813 - CA264_00305 0.31 +0.7
71,817 - CA264_00305 0.32 +0.2
71,817 - CA264_00305 0.32 +0.0
71,923 + CA264_00305 0.54 +1.0
71,925 + CA264_00305 0.55 -0.9
71,926 - CA264_00305 0.55 +1.4
71,957 + CA264_00305 0.61 -1.1
71,992 - CA264_00305 0.69 -0.3
71,992 - CA264_00305 0.69 -1.0
71,996 + CA264_00305 0.70 -0.8
71,997 - CA264_00305 0.70 +0.1
71,998 + CA264_00305 0.70 -0.1
71,999 - CA264_00305 0.70 -0.9
71,999 - CA264_00305 0.70 +0.2
72,052 - CA264_00305 0.81 +0.6
72,185 + -0.7
72,234 + -0.0
72,244 - +0.2
72,278 - -0.7
72,296 - +0.6
72,325 + +0.7
72,326 - +1.3
72,436 + CA264_00310 0.13 -0.5
72,436 + CA264_00310 0.13 -0.4
72,436 + CA264_00310 0.13 -0.1
72,508 + CA264_00310 0.18 -0.6
72,525 + CA264_00310 0.19 -0.7
72,526 - CA264_00310 0.19 +2.2
72,526 - CA264_00310 0.19 +0.2
72,526 - CA264_00310 0.19 +0.3
72,526 - CA264_00310 0.19 -0.9
72,526 - CA264_00310 0.19 -0.5
72,527 + CA264_00310 0.19 +0.3
72,528 - CA264_00310 0.19 +0.8
72,528 - CA264_00310 0.19 -0.9

Or see this region's nucleotide sequence