Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5449 and Atu5450 are separated by 62 nucleotides Atu5450 and Atu5451 are separated by 137 nucleotides Atu5451 and Atu5452 are separated by 295 nucleotides Atu5452 and Atu5453 overlap by 4 nucleotides
Atu5449: Atu5449 - heat-shock protein, at 442,069 to 442,545
Atu5449
Atu5450: Atu5450 - hypothetical protein, at 442,608 to 442,907
Atu5450
Atu5451: Atu5451 - hypothetical protein, at 443,045 to 443,251
Atu5451
Atu5452: Atu5452 - ABC transporter nucleotide binding/ATPase, at 443,547 to 444,206
Atu5452
Atu5453: Atu5453 - ABC transporter membrane spanning protein, at 444,203 to 446,611
Atu5453
Position (kb) 443
444 Strain fitness (log2 ratio) -2
-1
0
1
2 at 442.046 kb on - strand at 442.059 kb on + strand at 442.059 kb on + strand at 442.059 kb on + strand at 442.073 kb on - strand at 442.078 kb on + strand at 442.080 kb on - strand at 442.093 kb on + strand at 442.191 kb on + strand, within Atu5449 at 442.265 kb on - strand, within Atu5449 at 442.279 kb on + strand, within Atu5449 at 442.286 kb on - strand, within Atu5449 at 442.323 kb on - strand, within Atu5449 at 442.352 kb on + strand, within Atu5449 at 442.391 kb on - strand, within Atu5449 at 442.500 kb on + strand at 442.606 kb on - strand at 442.673 kb on - strand, within Atu5450 at 442.686 kb on - strand, within Atu5450 at 442.686 kb on - strand, within Atu5450 at 442.749 kb on + strand, within Atu5450 at 442.762 kb on + strand, within Atu5450 at 442.762 kb on + strand, within Atu5450 at 442.762 kb on + strand, within Atu5450 at 442.767 kb on + strand, within Atu5450 at 442.767 kb on + strand, within Atu5450 at 442.922 kb on + strand at 443.016 kb on + strand at 443.016 kb on + strand at 443.125 kb on + strand, within Atu5451 at 443.128 kb on - strand, within Atu5451 at 443.254 kb on - strand at 443.427 kb on + strand at 443.446 kb on - strand at 443.455 kb on - strand at 443.460 kb on - strand at 443.519 kb on - strand at 443.553 kb on - strand at 443.617 kb on - strand, within Atu5452 at 443.690 kb on + strand, within Atu5452 at 443.700 kb on + strand, within Atu5452 at 443.707 kb on + strand, within Atu5452 at 443.715 kb on + strand, within Atu5452 at 443.717 kb on + strand, within Atu5452 at 443.728 kb on - strand, within Atu5452 at 443.776 kb on + strand, within Atu5452 at 443.784 kb on - strand, within Atu5452 at 443.794 kb on - strand, within Atu5452 at 443.953 kb on + strand, within Atu5452 at 444.021 kb on + strand, within Atu5452 at 444.021 kb on + strand, within Atu5452 at 444.021 kb on + strand, within Atu5452 at 444.244 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 442,046 - +0.2 442,059 + +1.9 442,059 + +0.2 442,059 + +0.1 442,073 - +0.6 442,078 + +0.1 442,080 - -0.6 442,093 + +0.7 442,191 + Atu5449 0.26 +1.9 442,265 - Atu5449 0.41 +1.6 442,279 + Atu5449 0.44 -0.7 442,286 - Atu5449 0.45 +0.8 442,323 - Atu5449 0.53 +1.6 442,352 + Atu5449 0.59 +1.1 442,391 - Atu5449 0.68 -0.3 442,500 + +0.4 442,606 - +1.8 442,673 - Atu5450 0.22 -0.9 442,686 - Atu5450 0.26 -0.1 442,686 - Atu5450 0.26 +0.1 442,749 + Atu5450 0.47 +1.1 442,762 + Atu5450 0.51 +0.3 442,762 + Atu5450 0.51 +0.4 442,762 + Atu5450 0.51 -0.4 442,767 + Atu5450 0.53 -0.0 442,767 + Atu5450 0.53 -0.6 442,922 + +0.1 443,016 + +2.3 443,016 + +0.9 443,125 + Atu5451 0.39 -0.6 443,128 - Atu5451 0.40 -0.9 443,254 - -1.2 443,427 + +0.3 443,446 - +0.6 443,455 - -0.5 443,460 - +1.9 443,519 - -0.4 443,553 - -0.3 443,617 - Atu5452 0.11 -0.7 443,690 + Atu5452 0.22 +0.4 443,700 + Atu5452 0.23 -0.1 443,707 + Atu5452 0.24 -0.9 443,715 + Atu5452 0.25 +2.3 443,717 + Atu5452 0.26 +0.6 443,728 - Atu5452 0.27 +1.5 443,776 + Atu5452 0.35 -0.3 443,784 - Atu5452 0.36 +0.3 443,794 - Atu5452 0.37 -1.1 443,953 + Atu5452 0.62 +0.2 444,021 + Atu5452 0.72 -0.0 444,021 + Atu5452 0.72 -2.6 444,021 + Atu5452 0.72 -2.0 444,244 + -0.0
Or see this region's nucleotide sequence