Strain Fitness in Pseudomonas simiae WCS417 around PS417_04220

Experiment: L-Valine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_04215 and PS417_04220 overlap by 4 nucleotidesPS417_04220 and PS417_04225 overlap by 4 nucleotides PS417_04215: PS417_04215 - malate transporter, at 945,469 to 946,410 _04215 PS417_04220: PS417_04220 - 4-carboxymuconolactone decarboxylase, at 946,407 to 946,787 _04220 PS417_04225: PS417_04225 - conjugal transfer protein TraR, at 946,784 to 947,830 _04225 Position (kb) 946 947Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 945.434 kb on - strandat 945.441 kb on + strandat 945.682 kb on + strand, within PS417_04215at 945.766 kb on + strand, within PS417_04215at 945.766 kb on + strand, within PS417_04215at 945.766 kb on + strand, within PS417_04215at 945.767 kb on - strand, within PS417_04215at 945.767 kb on - strand, within PS417_04215at 945.767 kb on - strand, within PS417_04215at 945.767 kb on - strand, within PS417_04215at 945.767 kb on - strand, within PS417_04215at 945.767 kb on - strand, within PS417_04215at 945.768 kb on + strand, within PS417_04215at 945.829 kb on + strand, within PS417_04215at 945.886 kb on + strand, within PS417_04215at 945.887 kb on - strand, within PS417_04215at 945.920 kb on - strand, within PS417_04215at 945.920 kb on - strand, within PS417_04215at 946.252 kb on + strand, within PS417_04215at 946.252 kb on + strand, within PS417_04215at 946.253 kb on - strand, within PS417_04215at 946.408 kb on + strandat 946.409 kb on - strandat 946.484 kb on - strand, within PS417_04220at 946.866 kb on + strandat 946.866 kb on + strandat 946.866 kb on + strandat 946.866 kb on + strandat 946.866 kb on + strandat 946.867 kb on - strandat 946.869 kb on + strandat 946.869 kb on + strandat 946.869 kb on + strandat 946.869 kb on + strandat 946.870 kb on - strandat 946.870 kb on - strandat 946.870 kb on - strandat 946.870 kb on - strandat 946.915 kb on + strand, within PS417_04225at 946.915 kb on + strand, within PS417_04225at 947.620 kb on + strand, within PS417_04225

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
remove
945,434 - -1.3
945,441 + +0.3
945,682 + PS417_04215 0.23 -0.5
945,766 + PS417_04215 0.32 +1.2
945,766 + PS417_04215 0.32 +1.1
945,766 + PS417_04215 0.32 -1.7
945,767 - PS417_04215 0.32 -2.0
945,767 - PS417_04215 0.32 +0.9
945,767 - PS417_04215 0.32 +2.7
945,767 - PS417_04215 0.32 +2.1
945,767 - PS417_04215 0.32 -0.3
945,767 - PS417_04215 0.32 -1.1
945,768 + PS417_04215 0.32 -0.0
945,829 + PS417_04215 0.38 -2.1
945,886 + PS417_04215 0.44 +1.1
945,887 - PS417_04215 0.44 -0.3
945,920 - PS417_04215 0.48 +2.3
945,920 - PS417_04215 0.48 -1.6
946,252 + PS417_04215 0.83 +0.3
946,252 + PS417_04215 0.83 -0.6
946,253 - PS417_04215 0.83 -1.3
946,408 + +0.9
946,409 - +0.8
946,484 - PS417_04220 0.20 -2.2
946,866 + +0.7
946,866 + -0.6
946,866 + +0.8
946,866 + -0.9
946,866 + +1.4
946,867 - +1.2
946,869 + -0.1
946,869 + +1.7
946,869 + +0.3
946,869 + -1.1
946,870 - -2.3
946,870 - +0.4
946,870 - -1.5
946,870 - +0.1
946,915 + PS417_04225 0.13 -0.3
946,915 + PS417_04225 0.13 -3.2
947,620 + PS417_04225 0.80 +0.3

Or see this region's nucleotide sequence