Experiment: L-Valine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04130 and PS417_04135 are separated by 145 nucleotides PS417_04135 and PS417_04140 are separated by 112 nucleotides
PS417_04130: PS417_04130 - AraC family transcriptional regulator, at 928,626 to 929,621
_04130
PS417_04135: PS417_04135 - acyl-CoA dehydrogenase, at 929,767 to 930,903
_04135
PS417_04140: PS417_04140 - aldo/keto reductase, at 931,016 to 932,056
_04140
Position (kb) 929
930
931 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 928.805 kb on - strand, within PS417_04130 at 928.959 kb on + strand, within PS417_04130 at 928.960 kb on - strand, within PS417_04130 at 928.960 kb on - strand, within PS417_04130 at 928.996 kb on + strand, within PS417_04130 at 929.075 kb on - strand, within PS417_04130 at 929.078 kb on + strand, within PS417_04130 at 929.078 kb on + strand, within PS417_04130 at 929.078 kb on + strand, within PS417_04130 at 929.079 kb on - strand, within PS417_04130 at 929.079 kb on - strand, within PS417_04130 at 929.079 kb on - strand, within PS417_04130 at 929.080 kb on + strand, within PS417_04130 at 929.080 kb on + strand, within PS417_04130 at 929.080 kb on + strand, within PS417_04130 at 929.081 kb on - strand, within PS417_04130 at 929.117 kb on - strand, within PS417_04130 at 929.161 kb on - strand, within PS417_04130 at 929.161 kb on - strand, within PS417_04130 at 929.203 kb on + strand, within PS417_04130 at 929.204 kb on - strand, within PS417_04130 at 929.304 kb on + strand, within PS417_04130 at 929.304 kb on + strand, within PS417_04130 at 929.305 kb on - strand, within PS417_04130 at 929.305 kb on - strand, within PS417_04130 at 929.615 kb on + strand at 929.622 kb on - strand at 929.622 kb on - strand at 929.631 kb on + strand at 929.638 kb on - strand at 929.720 kb on + strand at 929.720 kb on + strand at 929.721 kb on - strand at 929.721 kb on - strand at 929.721 kb on - strand at 929.878 kb on + strand at 929.878 kb on + strand at 929.879 kb on - strand at 930.058 kb on + strand, within PS417_04135 at 930.059 kb on - strand, within PS417_04135 at 930.097 kb on + strand, within PS417_04135 at 930.097 kb on + strand, within PS417_04135 at 930.098 kb on - strand, within PS417_04135 at 930.098 kb on - strand, within PS417_04135 at 930.211 kb on + strand, within PS417_04135 at 930.211 kb on + strand, within PS417_04135 at 930.211 kb on + strand, within PS417_04135 at 930.212 kb on - strand, within PS417_04135 at 930.241 kb on - strand, within PS417_04135 at 930.250 kb on + strand, within PS417_04135 at 930.470 kb on - strand, within PS417_04135 at 930.559 kb on + strand, within PS417_04135 at 930.559 kb on + strand, within PS417_04135 at 930.559 kb on + strand, within PS417_04135 at 930.560 kb on - strand, within PS417_04135 at 930.560 kb on - strand, within PS417_04135 at 930.730 kb on + strand, within PS417_04135 at 930.730 kb on + strand, within PS417_04135 at 930.798 kb on + strand at 930.809 kb on - strand at 930.853 kb on + strand at 930.853 kb on + strand at 930.965 kb on + strand at 930.966 kb on - strand at 931.264 kb on - strand, within PS417_04140 at 931.282 kb on - strand, within PS417_04140 at 931.282 kb on - strand, within PS417_04140 at 931.323 kb on + strand, within PS417_04140 at 931.323 kb on + strand, within PS417_04140 at 931.323 kb on + strand, within PS417_04140 at 931.324 kb on - strand, within PS417_04140 at 931.324 kb on - strand, within PS417_04140 at 931.324 kb on - strand, within PS417_04140 at 931.324 kb on - strand, within PS417_04140 at 931.417 kb on + strand, within PS417_04140 at 931.418 kb on - strand, within PS417_04140 at 931.620 kb on + strand, within PS417_04140 at 931.671 kb on + strand, within PS417_04140 at 931.766 kb on - strand, within PS417_04140 at 931.768 kb on - strand, within PS417_04140 at 931.768 kb on - strand, within PS417_04140 at 931.855 kb on - strand, within PS417_04140 at 931.855 kb on - strand, within PS417_04140 at 931.872 kb on + strand at 931.872 kb on + strand, within PS417_04140 at 931.872 kb on + strand, within PS417_04140 at 931.872 kb on + strand, within PS417_04140 at 931.872 kb on + strand, within PS417_04140 at 931.872 kb on + strand, within PS417_04140 at 931.873 kb on - strand, within PS417_04140 at 931.873 kb on - strand, within PS417_04140
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (C) remove 928,805 - PS417_04130 0.18 -0.2 928,959 + PS417_04130 0.33 -0.2 928,960 - PS417_04130 0.34 +0.8 928,960 - PS417_04130 0.34 +0.7 928,996 + PS417_04130 0.37 +0.5 929,075 - PS417_04130 0.45 +0.9 929,078 + PS417_04130 0.45 +0.6 929,078 + PS417_04130 0.45 +2.4 929,078 + PS417_04130 0.45 -0.8 929,079 - PS417_04130 0.45 +0.7 929,079 - PS417_04130 0.45 -2.3 929,079 - PS417_04130 0.45 +0.6 929,080 + PS417_04130 0.46 +1.3 929,080 + PS417_04130 0.46 +0.7 929,080 + PS417_04130 0.46 +0.4 929,081 - PS417_04130 0.46 +2.0 929,117 - PS417_04130 0.49 +1.6 929,161 - PS417_04130 0.54 -0.7 929,161 - PS417_04130 0.54 +1.2 929,203 + PS417_04130 0.58 -0.6 929,204 - PS417_04130 0.58 -1.8 929,304 + PS417_04130 0.68 -0.2 929,304 + PS417_04130 0.68 -1.8 929,305 - PS417_04130 0.68 -2.2 929,305 - PS417_04130 0.68 -1.4 929,615 + +2.1 929,622 - -1.5 929,622 - +1.3 929,631 + +1.6 929,638 - -2.5 929,720 + +0.1 929,720 + +1.7 929,721 - -0.4 929,721 - -1.2 929,721 - -1.3 929,878 + -1.4 929,878 + -0.7 929,879 - -1.3 930,058 + PS417_04135 0.26 +1.2 930,059 - PS417_04135 0.26 +0.2 930,097 + PS417_04135 0.29 -0.6 930,097 + PS417_04135 0.29 -1.2 930,098 - PS417_04135 0.29 -1.3 930,098 - PS417_04135 0.29 +0.9 930,211 + PS417_04135 0.39 -0.8 930,211 + PS417_04135 0.39 +2.7 930,211 + PS417_04135 0.39 +1.7 930,212 - PS417_04135 0.39 -0.3 930,241 - PS417_04135 0.42 +1.4 930,250 + PS417_04135 0.42 +0.6 930,470 - PS417_04135 0.62 +1.2 930,559 + PS417_04135 0.70 -4.0 930,559 + PS417_04135 0.70 -0.9 930,559 + PS417_04135 0.70 +0.3 930,560 - PS417_04135 0.70 +0.7 930,560 - PS417_04135 0.70 -0.3 930,730 + PS417_04135 0.85 +2.3 930,730 + PS417_04135 0.85 -1.8 930,798 + +0.0 930,809 - -3.5 930,853 + -0.4 930,853 + -1.1 930,965 + -1.1 930,966 - +0.4 931,264 - PS417_04140 0.24 -0.3 931,282 - PS417_04140 0.26 +1.5 931,282 - PS417_04140 0.26 +0.9 931,323 + PS417_04140 0.29 -0.6 931,323 + PS417_04140 0.29 -0.1 931,323 + PS417_04140 0.29 -0.5 931,324 - PS417_04140 0.30 -1.6 931,324 - PS417_04140 0.30 +0.8 931,324 - PS417_04140 0.30 -1.8 931,324 - PS417_04140 0.30 -0.4 931,417 + PS417_04140 0.39 +2.2 931,418 - PS417_04140 0.39 -0.3 931,620 + PS417_04140 0.58 +1.5 931,671 + PS417_04140 0.63 -1.8 931,766 - PS417_04140 0.72 -1.0 931,768 - PS417_04140 0.72 -0.3 931,768 - PS417_04140 0.72 -0.7 931,855 - PS417_04140 0.81 -1.1 931,855 - PS417_04140 0.81 +0.6 931,872 + +0.7 931,872 + PS417_04140 0.82 -0.0 931,872 + PS417_04140 0.82 -0.7 931,872 + PS417_04140 0.82 +1.2 931,872 + PS417_04140 0.82 -0.9 931,872 + PS417_04140 0.82 -1.8 931,873 - PS417_04140 0.82 -1.1 931,873 - PS417_04140 0.82 +1.3
Or see this region's nucleotide sequence