Experiment: L-Valine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_28435 and PS417_28440 are separated by 36 nucleotides PS417_28440 and PS417_28445 are separated by 60 nucleotides
PS417_28435: PS417_28435 - penicillin-binding protein, at 6,141,580 to 6,143,877
_28435
PS417_28440: PS417_28440 - hypothetical protein, at 6,143,914 to 6,144,279
_28440
PS417_28445: PS417_28445 - glucosamine--fructose-6-phosphate aminotransferase, at 6,144,340 to 6,146,172
_28445
Position (kb)
6143
6144
6145 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 6142.915 kb on + strand, within PS417_28435 at 6142.916 kb on - strand, within PS417_28435 at 6142.957 kb on + strand, within PS417_28435 at 6142.958 kb on - strand, within PS417_28435 at 6143.146 kb on + strand, within PS417_28435 at 6143.146 kb on + strand, within PS417_28435 at 6143.147 kb on - strand, within PS417_28435 at 6143.303 kb on + strand, within PS417_28435 at 6143.377 kb on + strand, within PS417_28435 at 6143.377 kb on + strand, within PS417_28435 at 6143.377 kb on + strand, within PS417_28435 at 6143.378 kb on - strand, within PS417_28435 at 6143.480 kb on - strand, within PS417_28435 at 6143.571 kb on - strand, within PS417_28435 at 6143.650 kb on + strand at 6143.725 kb on + strand at 6143.726 kb on - strand at 6143.888 kb on + strand at 6144.146 kb on + strand, within PS417_28440 at 6144.179 kb on + strand, within PS417_28440 at 6144.180 kb on - strand, within PS417_28440 at 6144.341 kb on + strand at 6144.342 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (C) remove 6,142,915 + PS417_28435 0.58 -0.3 6,142,916 - PS417_28435 0.58 -0.7 6,142,957 + PS417_28435 0.60 +3.1 6,142,958 - PS417_28435 0.60 -0.0 6,143,146 + PS417_28435 0.68 -2.1 6,143,146 + PS417_28435 0.68 +1.5 6,143,147 - PS417_28435 0.68 -2.2 6,143,303 + PS417_28435 0.75 +1.8 6,143,377 + PS417_28435 0.78 +0.9 6,143,377 + PS417_28435 0.78 -0.1 6,143,377 + PS417_28435 0.78 -0.2 6,143,378 - PS417_28435 0.78 -0.9 6,143,480 - PS417_28435 0.83 +2.1 6,143,571 - PS417_28435 0.87 -0.6 6,143,650 + +0.9 6,143,725 + -1.9 6,143,726 - -0.0 6,143,888 + +0.6 6,144,146 + PS417_28440 0.63 +0.7 6,144,179 + PS417_28440 0.72 +0.7 6,144,180 - PS417_28440 0.73 +1.0 6,144,341 + -2.9 6,144,342 - +0.2
Or see this region's nucleotide sequence