Strain Fitness in Pseudomonas simiae WCS417 around PS417_24160

Experiment: L-Valine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_24155 and PS417_24160 overlap by 8 nucleotidesPS417_24160 and PS417_24165 are separated by 642 nucleotides PS417_24155: PS417_24155 - ATP-binding protein, at 5,231,300 to 5,234,629 _24155 PS417_24160: PS417_24160 - hypothetical protein, at 5,234,622 to 5,235,464 _24160 PS417_24165: PS417_24165 - hypothetical protein, at 5,236,107 to 5,236,799 _24165 Position (kb) 5234 5235 5236Strain fitness (log2 ratio) -2 -1 0 1at 5233.921 kb on + strand, within PS417_24155at 5235.082 kb on + strand, within PS417_24160at 5235.728 kb on + strandat 5235.974 kb on + strandat 5236.282 kb on - strand, within PS417_24165at 5236.282 kb on - strand, within PS417_24165at 5236.316 kb on - strand, within PS417_24165

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
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5,233,921 + PS417_24155 0.79 -2.1
5,235,082 + PS417_24160 0.55 +0.2
5,235,728 + -0.1
5,235,974 + -0.7
5,236,282 - PS417_24165 0.25 +0.9
5,236,282 - PS417_24165 0.25 -0.9
5,236,316 - PS417_24165 0.30 +0.2

Or see this region's nucleotide sequence