Strain Fitness in Pseudomonas simiae WCS417 around PS417_24050

Experiment: L-Valine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_24045 and PS417_24050 are separated by 259 nucleotidesPS417_24050 and PS417_24055 are separated by 10 nucleotides PS417_24045: PS417_24045 - carbamoyl phosphate synthase small subunit, at 5,206,264 to 5,207,400 _24045 PS417_24050: PS417_24050 - dihydrodipicolinate reductase, at 5,207,660 to 5,208,466 _24050 PS417_24055: PS417_24055 - molecular chaperone DnaJ, at 5,208,477 to 5,209,601 _24055 Position (kb) 5207 5208 5209Strain fitness (log2 ratio) -2 -1 0 1at 5207.418 kb on - strandat 5207.446 kb on - strandat 5207.625 kb on + strandat 5207.625 kb on + strandat 5207.626 kb on - strandat 5207.631 kb on + strandat 5207.650 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
remove
5,207,418 - +0.1
5,207,446 - +1.7
5,207,625 + -0.2
5,207,625 + -1.8
5,207,626 - -0.7
5,207,631 + +0.7
5,207,650 + +0.6

Or see this region's nucleotide sequence