Strain Fitness in Pseudomonas simiae WCS417 around PS417_23725

Experiment: L-Valine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_23715 and PS417_23720 are separated by 48 nucleotidesPS417_23720 and PS417_23725 are separated by 15 nucleotidesPS417_23725 and PS417_23730 are separated by 131 nucleotides PS417_23715: PS417_23715 - cupin, at 5,127,884 to 5,128,228 _23715 PS417_23720: PS417_23720 - 3-hydroxyisobutyrate dehydrogenase, at 5,128,277 to 5,129,164 _23720 PS417_23725: PS417_23725 - methylmalonate-semialdehyde dehydrogenase, at 5,129,180 to 5,130,697 _23725 PS417_23730: PS417_23730 - LysR family transcriptional regulator, at 5,130,829 to 5,131,776 _23730 Position (kb) 5129 5130 5131Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 5128.207 kb on + strandat 5128.208 kb on - strandat 5128.279 kb on - strandat 5128.300 kb on + strandat 5128.301 kb on - strandat 5128.304 kb on - strandat 5128.512 kb on + strand, within PS417_23720at 5128.512 kb on + strandat 5128.513 kb on - strand, within PS417_23720at 5129.541 kb on + strand, within PS417_23725at 5130.273 kb on + strand, within PS417_23725at 5130.273 kb on + strand, within PS417_23725at 5130.274 kb on - strand, within PS417_23725at 5130.277 kb on + strand, within PS417_23725at 5130.716 kb on + strandat 5130.717 kb on - strandat 5130.717 kb on - strandat 5130.720 kb on + strandat 5130.721 kb on - strandat 5130.721 kb on - strandat 5130.782 kb on + strandat 5130.782 kb on + strandat 5130.782 kb on + strandat 5130.783 kb on - strandat 5130.783 kb on - strandat 5130.783 kb on - strandat 5130.783 kb on - strandat 5130.944 kb on - strand, within PS417_23730at 5130.944 kb on - strand, within PS417_23730at 5131.316 kb on - strand, within PS417_23730at 5131.316 kb on - strand, within PS417_23730at 5131.355 kb on - strand, within PS417_23730at 5131.369 kb on + strand, within PS417_23730at 5131.370 kb on - strand, within PS417_23730at 5131.370 kb on - strand, within PS417_23730at 5131.426 kb on - strand, within PS417_23730at 5131.432 kb on + strand, within PS417_23730at 5131.432 kb on + strand, within PS417_23730at 5131.432 kb on + strand, within PS417_23730at 5131.432 kb on + strand, within PS417_23730at 5131.512 kb on + strand, within PS417_23730at 5131.531 kb on + strand, within PS417_23730at 5131.531 kb on + strand, within PS417_23730at 5131.532 kb on - strand, within PS417_23730at 5131.627 kb on - strand, within PS417_23730at 5131.651 kb on + strandat 5131.651 kb on + strand, within PS417_23730at 5131.651 kb on + strand, within PS417_23730at 5131.652 kb on - strand, within PS417_23730at 5131.686 kb on + strandat 5131.686 kb on + strandat 5131.687 kb on - strandat 5131.687 kb on - strandat 5131.687 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
remove
5,128,207 + +1.9
5,128,208 - +1.1
5,128,279 - +0.3
5,128,300 + -3.6
5,128,301 - -1.3
5,128,304 - -5.0
5,128,512 + PS417_23720 0.26 -2.5
5,128,512 + +0.1
5,128,513 - PS417_23720 0.27 +0.7
5,129,541 + PS417_23725 0.24 -2.5
5,130,273 + PS417_23725 0.72 -4.8
5,130,273 + PS417_23725 0.72 -1.5
5,130,274 - PS417_23725 0.72 -2.3
5,130,277 + PS417_23725 0.72 +0.1
5,130,716 + -0.9
5,130,717 - +0.7
5,130,717 - -2.4
5,130,720 + -3.7
5,130,721 - -2.9
5,130,721 - -0.8
5,130,782 + -4.6
5,130,782 + -4.1
5,130,782 + -0.8
5,130,783 - -2.9
5,130,783 - -3.9
5,130,783 - -1.0
5,130,783 - -1.9
5,130,944 - PS417_23730 0.12 -2.1
5,130,944 - PS417_23730 0.12 -0.9
5,131,316 - PS417_23730 0.51 -2.7
5,131,316 - PS417_23730 0.51 +0.7
5,131,355 - PS417_23730 0.55 -3.1
5,131,369 + PS417_23730 0.57 -4.1
5,131,370 - PS417_23730 0.57 -1.6
5,131,370 - PS417_23730 0.57 -5.2
5,131,426 - PS417_23730 0.63 -3.7
5,131,432 + PS417_23730 0.64 -3.1
5,131,432 + PS417_23730 0.64 -2.7
5,131,432 + PS417_23730 0.64 -2.3
5,131,432 + PS417_23730 0.64 -5.6
5,131,512 + PS417_23730 0.72 -2.9
5,131,531 + PS417_23730 0.74 -3.2
5,131,531 + PS417_23730 0.74 -2.6
5,131,532 - PS417_23730 0.74 -3.3
5,131,627 - PS417_23730 0.84 -4.0
5,131,651 + -0.3
5,131,651 + PS417_23730 0.87 -3.9
5,131,651 + PS417_23730 0.87 -1.8
5,131,652 - PS417_23730 0.87 -2.6
5,131,686 + -3.9
5,131,686 + -1.1
5,131,687 - -3.9
5,131,687 - -3.3
5,131,687 - -3.2

Or see this region's nucleotide sequence