Experiment: L-Valine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23200 and PS417_23205 are separated by 50 nucleotides PS417_23205 and PS417_23210 are separated by 291 nucleotides PS417_23210 and PS417_23215 are separated by 2 nucleotides PS417_23215 and PS417_23220 are separated by 145 nucleotides
PS417_23200: PS417_23200 - cysteine desulfurase, at 5,025,811 to 5,027,025
_23200
PS417_23205: PS417_23205 - transcriptional regulator, at 5,027,076 to 5,027,567
_23205
PS417_23210: PS417_23210 - serine acetyltransferase, at 5,027,859 to 5,028,641
_23210
PS417_23215: PS417_23215 - RNA methyltransferase, at 5,028,644 to 5,029,414
_23215
PS417_23220: PS417_23220 - inositol monophosphatase, at 5,029,560 to 5,030,375
_23220
Position (kb) 5027
5028
5029 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5027.349 kb on - strand, within PS417_23205 at 5027.447 kb on - strand, within PS417_23205 at 5027.576 kb on - strand at 5027.576 kb on - strand at 5027.576 kb on - strand at 5027.870 kb on - strand at 5028.065 kb on - strand, within PS417_23210 at 5028.658 kb on + strand at 5028.710 kb on + strand at 5028.712 kb on + strand at 5028.712 kb on + strand at 5028.713 kb on - strand at 5028.713 kb on - strand at 5028.713 kb on - strand at 5028.835 kb on - strand, within PS417_23215 at 5028.835 kb on - strand, within PS417_23215 at 5028.835 kb on - strand, within PS417_23215 at 5028.902 kb on + strand, within PS417_23215 at 5028.903 kb on - strand, within PS417_23215 at 5028.951 kb on + strand, within PS417_23215 at 5029.381 kb on + strand at 5029.472 kb on - strand at 5029.486 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (C) remove 5,027,349 - PS417_23205 0.55 +0.5 5,027,447 - PS417_23205 0.75 +0.0 5,027,576 - +2.3 5,027,576 - -0.7 5,027,576 - +0.9 5,027,870 - +2.5 5,028,065 - PS417_23210 0.26 +1.5 5,028,658 + -0.4 5,028,710 + +0.2 5,028,712 + +0.7 5,028,712 + +0.9 5,028,713 - -1.4 5,028,713 - +1.4 5,028,713 - +1.7 5,028,835 - PS417_23215 0.25 +1.1 5,028,835 - PS417_23215 0.25 +2.4 5,028,835 - PS417_23215 0.25 -0.8 5,028,902 + PS417_23215 0.33 -3.0 5,028,903 - PS417_23215 0.34 -0.7 5,028,951 + PS417_23215 0.40 -2.0 5,029,381 + -1.0 5,029,472 - +0.9 5,029,486 - +0.8
Or see this region's nucleotide sequence