Strain Fitness in Pseudomonas simiae WCS417 around PS417_02220

Experiment: L-Valine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02215 and PS417_02220 are separated by 11 nucleotidesPS417_02220 and PS417_02225 are separated by 383 nucleotides PS417_02215: PS417_02215 - dihydrolipoamide acetyltransferase, at 500,669 to 502,315 _02215 PS417_02220: PS417_02220 - pyruvate dehydrogenase, at 502,327 to 504,972 _02220 PS417_02225: PS417_02225 - bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase, at 505,356 to 508,295 _02225 Position (kb) 502 503 504 505Strain fitness (log2 ratio) -2 -1 0 1at 505.128 kb on - strandat 505.132 kb on - strandat 505.138 kb on - strandat 505.297 kb on - strandat 505.311 kb on - strandat 505.323 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
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505,128 - -0.5
505,132 - -2.7
505,138 - -1.2
505,297 - -1.7
505,311 - +0.3
505,323 - -0.7

Or see this region's nucleotide sequence