Experiment: L-Valine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20785 and PS417_20790 are separated by 80 nucleotides PS417_20790 and PS417_20795 are separated by 134 nucleotides PS417_20795 and PS417_20800 are separated by 132 nucleotides
PS417_20785: PS417_20785 - transcriptional regulator, at 4,515,588 to 4,516,322
_20785
PS417_20790: PS417_20790 - adenine phosphoribosyltransferase, at 4,516,403 to 4,516,951
_20790
PS417_20795: PS417_20795 - acyl-CoA dehydrogenase, at 4,517,086 to 4,518,234
_20795
PS417_20800: PS417_20800 - recombination protein RecR, at 4,518,367 to 4,518,969
_20800
Position (kb) 4517
4518
4519 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4516.180 kb on - strand, within PS417_20785 at 4516.269 kb on - strand at 4516.363 kb on + strand at 4516.366 kb on - strand at 4516.486 kb on + strand, within PS417_20790 at 4516.487 kb on - strand, within PS417_20790 at 4516.487 kb on - strand, within PS417_20790 at 4516.487 kb on - strand, within PS417_20790 at 4516.547 kb on + strand, within PS417_20790 at 4516.547 kb on + strand, within PS417_20790 at 4516.548 kb on - strand, within PS417_20790 at 4516.619 kb on + strand, within PS417_20790 at 4516.620 kb on - strand, within PS417_20790 at 4517.018 kb on + strand at 4517.018 kb on + strand at 4517.018 kb on + strand at 4517.018 kb on + strand at 4517.155 kb on - strand at 4517.168 kb on + strand at 4517.198 kb on + strand at 4517.198 kb on + strand at 4517.199 kb on - strand at 4517.199 kb on - strand at 4517.231 kb on + strand, within PS417_20795 at 4517.231 kb on + strand, within PS417_20795 at 4517.232 kb on - strand, within PS417_20795 at 4517.647 kb on - strand, within PS417_20795 at 4517.726 kb on + strand, within PS417_20795 at 4518.101 kb on + strand, within PS417_20795 at 4518.215 kb on + strand at 4518.215 kb on + strand at 4518.216 kb on - strand at 4518.369 kb on - strand at 4518.369 kb on - strand at 4518.506 kb on + strand, within PS417_20800 at 4518.506 kb on + strand, within PS417_20800 at 4518.506 kb on + strand, within PS417_20800 at 4518.506 kb on + strand, within PS417_20800 at 4518.506 kb on + strand, within PS417_20800 at 4518.506 kb on + strand, within PS417_20800 at 4518.507 kb on - strand, within PS417_20800 at 4518.507 kb on - strand, within PS417_20800 at 4518.507 kb on - strand, within PS417_20800 at 4518.507 kb on - strand, within PS417_20800 at 4518.562 kb on - strand, within PS417_20800 at 4518.662 kb on + strand, within PS417_20800 at 4518.695 kb on + strand, within PS417_20800 at 4518.696 kb on - strand, within PS417_20800 at 4519.070 kb on + strand at 4519.071 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (C) remove 4,516,180 - PS417_20785 0.81 -2.5 4,516,269 - -2.2 4,516,363 + -1.7 4,516,366 - +0.2 4,516,486 + PS417_20790 0.15 -1.2 4,516,487 - PS417_20790 0.15 +2.8 4,516,487 - PS417_20790 0.15 +0.6 4,516,487 - PS417_20790 0.15 -0.6 4,516,547 + PS417_20790 0.26 +0.2 4,516,547 + PS417_20790 0.26 +0.8 4,516,548 - PS417_20790 0.26 +0.5 4,516,619 + PS417_20790 0.39 +1.5 4,516,620 - PS417_20790 0.40 +0.7 4,517,018 + +0.6 4,517,018 + -1.2 4,517,018 + -1.5 4,517,018 + -0.2 4,517,155 - -0.5 4,517,168 + +0.1 4,517,198 + -1.0 4,517,198 + -0.6 4,517,199 - +0.7 4,517,199 - +0.8 4,517,231 + PS417_20795 0.13 -2.3 4,517,231 + PS417_20795 0.13 +1.0 4,517,232 - PS417_20795 0.13 +0.0 4,517,647 - PS417_20795 0.49 -0.9 4,517,726 + PS417_20795 0.56 +0.1 4,518,101 + PS417_20795 0.88 +1.6 4,518,215 + -2.2 4,518,215 + +0.0 4,518,216 - +0.1 4,518,369 - -2.3 4,518,369 - -2.2 4,518,506 + PS417_20800 0.23 -1.7 4,518,506 + PS417_20800 0.23 +0.5 4,518,506 + PS417_20800 0.23 +0.6 4,518,506 + PS417_20800 0.23 -1.3 4,518,506 + PS417_20800 0.23 +1.2 4,518,506 + PS417_20800 0.23 +0.4 4,518,507 - PS417_20800 0.23 +0.4 4,518,507 - PS417_20800 0.23 -1.2 4,518,507 - PS417_20800 0.23 -2.6 4,518,507 - PS417_20800 0.23 +0.5 4,518,562 - PS417_20800 0.32 +2.1 4,518,662 + PS417_20800 0.49 -1.5 4,518,695 + PS417_20800 0.54 -0.5 4,518,696 - PS417_20800 0.55 +2.0 4,519,070 + +0.7 4,519,071 - -0.5
Or see this region's nucleotide sequence