Experiment: L-Valine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20620 and PS417_20625 overlap by 4 nucleotides PS417_20625 and PS417_20630 are separated by 16 nucleotides PS417_20630 and PS417_20635 are separated by 35 nucleotides
PS417_20620: PS417_20620 - glycosyl transferase family 2, at 4,481,872 to 4,482,870
_20620
PS417_20625: PS417_20625 - hypothetical protein, at 4,482,867 to 4,483,205
_20625
PS417_20630: PS417_20630 - adenylylsulfate kinase, at 4,483,222 to 4,483,815
_20630
PS417_20635: PS417_20635 - ABC transporter ATP-binding protein, at 4,483,851 to 4,485,215
_20635
Position (kb) 4483
4484 Strain fitness (log2 ratio) -1
0
1 at 4482.366 kb on + strand, within PS417_20620 at 4482.368 kb on + strand at 4482.368 kb on + strand, within PS417_20620 at 4482.497 kb on - strand, within PS417_20620 at 4482.497 kb on - strand, within PS417_20620 at 4482.592 kb on + strand, within PS417_20620 at 4482.593 kb on - strand, within PS417_20620 at 4482.752 kb on + strand, within PS417_20620 at 4482.771 kb on - strand at 4482.793 kb on - strand at 4482.842 kb on + strand at 4482.843 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (C) remove 4,482,366 + PS417_20620 0.49 +0.9 4,482,368 + +1.6 4,482,368 + PS417_20620 0.50 +0.6 4,482,497 - PS417_20620 0.63 +0.9 4,482,497 - PS417_20620 0.63 -0.2 4,482,592 + PS417_20620 0.72 -0.8 4,482,593 - PS417_20620 0.72 +0.3 4,482,752 + PS417_20620 0.88 +1.6 4,482,771 - -0.1 4,482,793 - +0.8 4,482,842 + -0.8 4,482,843 - -0.1
Or see this region's nucleotide sequence