Experiment: L-Valine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17545 and PS417_17550 are separated by 1 nucleotides PS417_17550 and PS417_17555 are separated by 0 nucleotides
PS417_17545: PS417_17545 - 2-oxoisovalerate dehydrogenase, at 3,831,243 to 3,832,478
_17545
PS417_17550: PS417_17550 - branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) , at 3,832,480 to 3,833,538
_17550
PS417_17555: PS417_17555 - branched-chain alpha-keto acid dehydrogenase subunit E2, at 3,833,539 to 3,834,798
_17555
Position (kb)
3832
3833
3834 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 3831.561 kb on + strand, within PS417_17545 at 3831.643 kb on - strand, within PS417_17545 at 3831.754 kb on - strand, within PS417_17545 at 3831.812 kb on - strand, within PS417_17545 at 3831.934 kb on + strand, within PS417_17545 at 3832.206 kb on + strand, within PS417_17545 at 3832.780 kb on + strand, within PS417_17550 at 3832.780 kb on + strand, within PS417_17550 at 3832.895 kb on - strand, within PS417_17550 at 3833.137 kb on + strand at 3833.138 kb on - strand, within PS417_17550 at 3833.215 kb on + strand, within PS417_17550 at 3833.215 kb on + strand at 3833.215 kb on + strand, within PS417_17550 at 3833.483 kb on - strand at 3834.194 kb on + strand, within PS417_17555
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (C) remove 3,831,561 + PS417_17545 0.26 -2.7 3,831,643 - PS417_17545 0.32 -1.9 3,831,754 - PS417_17545 0.41 -2.9 3,831,812 - PS417_17545 0.46 -2.8 3,831,934 + PS417_17545 0.56 -4.0 3,832,206 + PS417_17545 0.78 +0.4 3,832,780 + PS417_17550 0.28 -2.5 3,832,780 + PS417_17550 0.28 -5.0 3,832,895 - PS417_17550 0.39 -3.6 3,833,137 + -0.2 3,833,138 - PS417_17550 0.62 +2.1 3,833,215 + PS417_17550 0.69 -4.4 3,833,215 + +0.4 3,833,215 + PS417_17550 0.69 -0.2 3,833,483 - -0.2 3,834,194 + PS417_17555 0.52 +1.2
Or see this region's nucleotide sequence