Strain Fitness in Pseudomonas simiae WCS417 around PS417_17160

Experiment: L-Valine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_17150 and PS417_17155 are separated by 114 nucleotidesPS417_17155 and PS417_17160 overlap by 11 nucleotidesPS417_17160 and PS417_17165 are separated by 57 nucleotides PS417_17150: PS417_17150 - phosphonoacetaldehyde hydrolase, at 3,745,056 to 3,745,883 _17150 PS417_17155: PS417_17155 - cytochrome B561, at 3,745,998 to 3,746,555 _17155 PS417_17160: PS417_17160 - 1-aminocyclopropane-1-carboxylate deaminase, at 3,746,545 to 3,747,429 _17160 PS417_17165: PS417_17165 - 2,4-dienoyl-CoA reductase, at 3,747,487 to 3,749,526 _17165 Position (kb) 3746 3747 3748Strain fitness (log2 ratio) -3 -2 -1 0 1at 3745.707 kb on + strand, within PS417_17150at 3745.707 kb on + strand, within PS417_17150at 3745.707 kb on + strand, within PS417_17150at 3745.708 kb on - strand, within PS417_17150at 3745.794 kb on + strand, within PS417_17150at 3745.794 kb on + strand, within PS417_17150at 3745.941 kb on - strandat 3746.025 kb on + strandat 3746.082 kb on + strand, within PS417_17155at 3746.083 kb on - strand, within PS417_17155at 3746.083 kb on - strand, within PS417_17155at 3746.099 kb on - strand, within PS417_17155at 3746.361 kb on + strand, within PS417_17155at 3746.666 kb on + strand, within PS417_17160at 3746.667 kb on - strand, within PS417_17160at 3746.785 kb on + strand, within PS417_17160at 3747.722 kb on + strand, within PS417_17165at 3748.061 kb on + strand, within PS417_17165at 3748.062 kb on - strand, within PS417_17165at 3748.062 kb on - strand, within PS417_17165at 3748.227 kb on - strand, within PS417_17165at 3748.415 kb on + strand, within PS417_17165

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
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3,745,707 + PS417_17150 0.79 -1.7
3,745,707 + PS417_17150 0.79 +0.8
3,745,707 + PS417_17150 0.79 +0.6
3,745,708 - PS417_17150 0.79 -0.9
3,745,794 + PS417_17150 0.89 +0.3
3,745,794 + PS417_17150 0.89 -0.0
3,745,941 - +0.3
3,746,025 + -1.5
3,746,082 + PS417_17155 0.15 +0.0
3,746,083 - PS417_17155 0.15 -1.2
3,746,083 - PS417_17155 0.15 +1.2
3,746,099 - PS417_17155 0.18 -1.2
3,746,361 + PS417_17155 0.65 -0.0
3,746,666 + PS417_17160 0.14 -1.5
3,746,667 - PS417_17160 0.14 -0.1
3,746,785 + PS417_17160 0.27 -0.7
3,747,722 + PS417_17165 0.12 +1.0
3,748,061 + PS417_17165 0.28 +0.1
3,748,062 - PS417_17165 0.28 +0.9
3,748,062 - PS417_17165 0.28 +0.3
3,748,227 - PS417_17165 0.36 -1.5
3,748,415 + PS417_17165 0.45 -3.0

Or see this region's nucleotide sequence