Strain Fitness in Pseudomonas simiae WCS417 around PS417_14930

Experiment: L-Valine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_14925 and PS417_14930 are separated by 10 nucleotidesPS417_14930 and PS417_14935 are separated by 28 nucleotidesPS417_14935 and PS417_14940 are separated by 131 nucleotides PS417_14925: PS417_14925 - 2-methylcitrate dehydratase, at 3,259,129 to 3,260,478 _14925 PS417_14930: PS417_14930 - acyl-CoA dehydrogenase, at 3,260,489 to 3,261,652 _14930 PS417_14935: PS417_14935 - transposase, at 3,261,681 to 3,262,499 _14935 PS417_14940: PS417_14940 - LysR family transcriptional regulator, at 3,262,631 to 3,263,521 _14940 Position (kb) 3260 3261 3262Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3259.794 kb on + strand, within PS417_14925at 3259.795 kb on - strand, within PS417_14925at 3259.909 kb on + strand, within PS417_14925at 3260.322 kb on - strand, within PS417_14925at 3260.529 kb on + strandat 3260.530 kb on - strandat 3260.604 kb on + strandat 3260.604 kb on + strandat 3260.605 kb on - strandat 3260.683 kb on - strand, within PS417_14930at 3260.728 kb on - strand, within PS417_14930at 3260.943 kb on + strand, within PS417_14930at 3260.943 kb on + strand, within PS417_14930at 3261.035 kb on - strand, within PS417_14930at 3261.035 kb on - strandat 3261.213 kb on + strand, within PS417_14930at 3261.213 kb on + strandat 3261.214 kb on - strand, within PS417_14930at 3261.382 kb on - strand, within PS417_14930at 3261.382 kb on - strand, within PS417_14930at 3261.382 kb on - strand, within PS417_14930at 3261.815 kb on - strand, within PS417_14935at 3261.943 kb on + strand, within PS417_14935at 3262.126 kb on + strand, within PS417_14935

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
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3,259,794 + PS417_14925 0.49 -3.7
3,259,795 - PS417_14925 0.49 +1.5
3,259,909 + PS417_14925 0.58 -0.2
3,260,322 - PS417_14925 0.88 -0.4
3,260,529 + +0.3
3,260,530 - +1.3
3,260,604 + +3.4
3,260,604 + +0.8
3,260,605 - -0.0
3,260,683 - PS417_14930 0.17 +1.7
3,260,728 - PS417_14930 0.21 -0.9
3,260,943 + PS417_14930 0.39 -1.2
3,260,943 + PS417_14930 0.39 -0.2
3,261,035 - PS417_14930 0.47 +0.1
3,261,035 - -0.9
3,261,213 + PS417_14930 0.62 -0.6
3,261,213 + +1.7
3,261,214 - PS417_14930 0.62 +0.5
3,261,382 - PS417_14930 0.77 +2.6
3,261,382 - PS417_14930 0.77 +1.0
3,261,382 - PS417_14930 0.77 +0.5
3,261,815 - PS417_14935 0.16 -1.4
3,261,943 + PS417_14935 0.32 +1.0
3,262,126 + PS417_14935 0.54 +2.5

Or see this region's nucleotide sequence