Strain Fitness in Pseudomonas simiae WCS417 around PS417_01485

Experiment: L-Valine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01480 and PS417_01485 overlap by 20 nucleotidesPS417_01485 and PS417_01490 are separated by 38 nucleotidesPS417_01490 and PS417_01495 are separated by 74 nucleotides PS417_01480: PS417_01480 - SAM-dependent methyltransferase, at 328,947 to 330,134 _01480 PS417_01485: PS417_01485 - ABC transporter permease, at 330,115 to 330,804 _01485 PS417_01490: PS417_01490 - ABC transporter permease, at 330,843 to 331,538 _01490 PS417_01495: PS417_01495 - amino acid ABC transporter, at 331,613 to 332,365 _01495 Position (kb) 330 331Strain fitness (log2 ratio) -2 -1 0 1 2 3at 329.140 kb on + strand, within PS417_01480at 329.209 kb on + strandat 329.264 kb on - strand, within PS417_01480at 329.467 kb on + strand, within PS417_01480at 329.468 kb on - strand, within PS417_01480at 329.468 kb on - strand, within PS417_01480at 329.468 kb on - strand, within PS417_01480at 329.677 kb on + strand, within PS417_01480at 329.709 kb on + strand, within PS417_01480at 329.710 kb on - strand, within PS417_01480at 329.879 kb on + strand, within PS417_01480at 329.879 kb on + strand, within PS417_01480at 330.033 kb on + strandat 330.033 kb on + strandat 330.172 kb on + strandat 330.182 kb on + strandat 330.182 kb on + strandat 330.198 kb on - strand, within PS417_01485at 330.198 kb on - strand, within PS417_01485at 330.236 kb on + strand, within PS417_01485at 330.241 kb on - strand, within PS417_01485at 330.380 kb on + strand, within PS417_01485at 330.380 kb on + strand, within PS417_01485at 330.380 kb on + strand, within PS417_01485at 330.381 kb on - strand, within PS417_01485at 330.381 kb on - strand, within PS417_01485at 330.480 kb on - strand, within PS417_01485at 330.584 kb on + strand, within PS417_01485at 330.588 kb on - strand, within PS417_01485at 330.639 kb on - strand, within PS417_01485at 330.644 kb on + strand, within PS417_01485at 330.645 kb on - strand, within PS417_01485at 330.662 kb on + strand, within PS417_01485at 330.663 kb on - strand, within PS417_01485at 330.663 kb on - strand, within PS417_01485at 330.833 kb on + strandat 331.324 kb on + strand, within PS417_01490at 331.324 kb on + strand, within PS417_01490at 331.356 kb on - strand, within PS417_01490at 331.375 kb on + strand, within PS417_01490at 331.405 kb on + strand, within PS417_01490at 331.406 kb on - strand, within PS417_01490at 331.441 kb on - strand, within PS417_01490at 331.635 kb on + strandat 331.635 kb on + strandat 331.635 kb on + strandat 331.636 kb on - strandat 331.636 kb on - strandat 331.656 kb on + strandat 331.656 kb on + strandat 331.657 kb on - strandat 331.752 kb on - strand, within PS417_01495

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
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329,140 + PS417_01480 0.16 +0.1
329,209 + -0.7
329,264 - PS417_01480 0.27 +1.2
329,467 + PS417_01480 0.44 +0.6
329,468 - PS417_01480 0.44 +1.5
329,468 - PS417_01480 0.44 -1.3
329,468 - PS417_01480 0.44 +0.1
329,677 + PS417_01480 0.61 +1.9
329,709 + PS417_01480 0.64 -0.1
329,710 - PS417_01480 0.64 -1.1
329,879 + PS417_01480 0.78 -0.7
329,879 + PS417_01480 0.78 +0.7
330,033 + -1.2
330,033 + +0.6
330,172 + +0.8
330,182 + +0.8
330,182 + +2.6
330,198 - PS417_01485 0.12 +1.6
330,198 - PS417_01485 0.12 +0.4
330,236 + PS417_01485 0.18 -0.3
330,241 - PS417_01485 0.18 +0.9
330,380 + PS417_01485 0.38 -2.3
330,380 + PS417_01485 0.38 +3.5
330,380 + PS417_01485 0.38 +1.4
330,381 - PS417_01485 0.39 -1.4
330,381 - PS417_01485 0.39 +0.0
330,480 - PS417_01485 0.53 +0.7
330,584 + PS417_01485 0.68 +2.0
330,588 - PS417_01485 0.69 -0.0
330,639 - PS417_01485 0.76 -1.6
330,644 + PS417_01485 0.77 -0.7
330,645 - PS417_01485 0.77 +0.9
330,662 + PS417_01485 0.79 +2.3
330,663 - PS417_01485 0.79 +1.4
330,663 - PS417_01485 0.79 +1.1
330,833 + +1.2
331,324 + PS417_01490 0.69 -1.6
331,324 + PS417_01490 0.69 +0.5
331,356 - PS417_01490 0.74 +1.2
331,375 + PS417_01490 0.76 +0.6
331,405 + PS417_01490 0.81 -1.2
331,406 - PS417_01490 0.81 -2.1
331,441 - PS417_01490 0.86 +0.5
331,635 + -0.9
331,635 + +0.9
331,635 + +1.4
331,636 - +3.3
331,636 - +0.6
331,656 + -1.7
331,656 + +1.3
331,657 - +2.6
331,752 - PS417_01495 0.18 -2.7

Or see this region's nucleotide sequence