Strain Fitness in Pseudomonas simiae WCS417 around PS417_12895

Experiment: L-Valine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_12890 and PS417_12895 are separated by 191 nucleotidesPS417_12895 and PS417_12900 are separated by 77 nucleotidesPS417_12900 and PS417_12905 are separated by 100 nucleotides PS417_12890: PS417_12890 - methyltransferase, at 2,818,630 to 2,819,544 _12890 PS417_12895: PS417_12895 - pyruvate dehydrogenase, at 2,819,736 to 2,822,402 _12895 PS417_12900: PS417_12900 - Fe-S protein, at 2,822,480 to 2,822,968 _12900 PS417_12905: PS417_12905 - ribonucleotide-diphosphate reductase subunit beta, at 2,823,069 to 2,824,319 _12905 Position (kb) 2819 2820 2821 2822 2823Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 2818.795 kb on + strand, within PS417_12890at 2818.795 kb on + strand, within PS417_12890at 2818.796 kb on - strand, within PS417_12890at 2818.812 kb on + strand, within PS417_12890at 2819.050 kb on + strand, within PS417_12890at 2819.050 kb on + strandat 2819.051 kb on - strand, within PS417_12890at 2819.051 kb on - strand, within PS417_12890at 2819.097 kb on + strand, within PS417_12890at 2819.315 kb on + strand, within PS417_12890at 2819.316 kb on - strand, within PS417_12890at 2819.531 kb on - strandat 2819.677 kb on + strandat 2819.910 kb on + strandat 2819.910 kb on + strandat 2819.913 kb on - strandat 2819.918 kb on + strandat 2820.063 kb on + strand, within PS417_12895at 2820.150 kb on + strand, within PS417_12895at 2820.151 kb on - strand, within PS417_12895at 2820.151 kb on - strand, within PS417_12895at 2820.745 kb on - strand, within PS417_12895at 2821.188 kb on + strandat 2821.189 kb on - strand, within PS417_12895at 2821.292 kb on + strand, within PS417_12895at 2821.293 kb on - strand, within PS417_12895at 2821.358 kb on + strand, within PS417_12895at 2821.358 kb on + strand, within PS417_12895at 2821.358 kb on + strand, within PS417_12895at 2821.359 kb on - strand, within PS417_12895at 2821.359 kb on - strand, within PS417_12895at 2821.363 kb on - strand, within PS417_12895at 2821.363 kb on - strand, within PS417_12895at 2821.383 kb on + strand, within PS417_12895at 2821.417 kb on - strand, within PS417_12895at 2821.454 kb on + strand, within PS417_12895at 2821.536 kb on + strand, within PS417_12895at 2821.537 kb on - strand, within PS417_12895at 2821.537 kb on - strand, within PS417_12895at 2821.537 kb on - strand, within PS417_12895at 2821.537 kb on - strand, within PS417_12895at 2821.537 kb on - strand, within PS417_12895at 2821.542 kb on + strand, within PS417_12895at 2821.542 kb on + strandat 2821.542 kb on + strand, within PS417_12895at 2821.542 kb on + strand, within PS417_12895at 2821.542 kb on + strand, within PS417_12895at 2821.543 kb on - strand, within PS417_12895at 2821.543 kb on - strand, within PS417_12895at 2821.543 kb on - strand, within PS417_12895at 2821.546 kb on - strand, within PS417_12895at 2821.806 kb on + strand, within PS417_12895at 2821.806 kb on + strand, within PS417_12895at 2821.807 kb on - strand, within PS417_12895at 2821.807 kb on - strand, within PS417_12895at 2821.807 kb on - strand, within PS417_12895at 2821.809 kb on + strand, within PS417_12895at 2821.809 kb on + strand, within PS417_12895at 2821.810 kb on - strand, within PS417_12895at 2821.887 kb on + strand, within PS417_12895at 2821.887 kb on + strand, within PS417_12895at 2821.888 kb on - strand, within PS417_12895at 2821.888 kb on - strand, within PS417_12895at 2822.151 kb on + strandat 2822.151 kb on + strandat 2822.152 kb on - strandat 2822.184 kb on + strandat 2822.184 kb on + strandat 2822.185 kb on - strandat 2822.185 kb on - strandat 2822.185 kb on - strandat 2822.185 kb on - strandat 2822.538 kb on + strand, within PS417_12900at 2822.538 kb on + strand, within PS417_12900at 2822.538 kb on + strand, within PS417_12900at 2822.538 kb on + strand, within PS417_12900at 2822.539 kb on - strand, within PS417_12900at 2822.692 kb on - strand, within PS417_12900at 2822.980 kb on - strandat 2823.063 kb on + strandat 2823.101 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
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2,818,795 + PS417_12890 0.18 -0.7
2,818,795 + PS417_12890 0.18 +1.6
2,818,796 - PS417_12890 0.18 -3.1
2,818,812 + PS417_12890 0.20 +0.7
2,819,050 + PS417_12890 0.46 +0.8
2,819,050 + -0.9
2,819,051 - PS417_12890 0.46 -0.1
2,819,051 - PS417_12890 0.46 +1.1
2,819,097 + PS417_12890 0.51 +1.1
2,819,315 + PS417_12890 0.75 +0.3
2,819,316 - PS417_12890 0.75 +0.8
2,819,531 - -0.3
2,819,677 + +0.9
2,819,910 + +2.8
2,819,910 + +3.5
2,819,913 - +3.8
2,819,918 + +3.7
2,820,063 + PS417_12895 0.12 +0.7
2,820,150 + PS417_12895 0.16 +4.1
2,820,151 - PS417_12895 0.16 +5.0
2,820,151 - PS417_12895 0.16 +2.8
2,820,745 - PS417_12895 0.38 +3.2
2,821,188 + +7.3
2,821,189 - PS417_12895 0.54 +2.4
2,821,292 + PS417_12895 0.58 +1.0
2,821,293 - PS417_12895 0.58 +5.4
2,821,358 + PS417_12895 0.61 +5.2
2,821,358 + PS417_12895 0.61 +4.2
2,821,358 + PS417_12895 0.61 +4.1
2,821,359 - PS417_12895 0.61 +2.9
2,821,359 - PS417_12895 0.61 +3.5
2,821,363 - PS417_12895 0.61 +3.8
2,821,363 - PS417_12895 0.61 +3.5
2,821,383 + PS417_12895 0.62 +3.4
2,821,417 - PS417_12895 0.63 +3.1
2,821,454 + PS417_12895 0.64 +3.5
2,821,536 + PS417_12895 0.67 +4.4
2,821,537 - PS417_12895 0.68 +5.2
2,821,537 - PS417_12895 0.68 +4.3
2,821,537 - PS417_12895 0.68 +3.1
2,821,537 - PS417_12895 0.68 -0.4
2,821,537 - PS417_12895 0.68 +1.1
2,821,542 + PS417_12895 0.68 +4.1
2,821,542 + +0.7
2,821,542 + PS417_12895 0.68 +3.4
2,821,542 + PS417_12895 0.68 +3.9
2,821,542 + PS417_12895 0.68 +3.7
2,821,543 - PS417_12895 0.68 +2.7
2,821,543 - PS417_12895 0.68 +0.7
2,821,543 - PS417_12895 0.68 +4.5
2,821,546 - PS417_12895 0.68 +2.3
2,821,806 + PS417_12895 0.78 +2.4
2,821,806 + PS417_12895 0.78 +2.8
2,821,807 - PS417_12895 0.78 +2.4
2,821,807 - PS417_12895 0.78 +2.9
2,821,807 - PS417_12895 0.78 +4.5
2,821,809 + PS417_12895 0.78 +2.7
2,821,809 + PS417_12895 0.78 +4.9
2,821,810 - PS417_12895 0.78 +3.4
2,821,887 + PS417_12895 0.81 +5.4
2,821,887 + PS417_12895 0.81 +4.1
2,821,888 - PS417_12895 0.81 +4.6
2,821,888 - PS417_12895 0.81 +3.7
2,822,151 + +3.9
2,822,151 + +3.2
2,822,152 - +3.7
2,822,184 + +1.1
2,822,184 + +3.5
2,822,185 - +1.8
2,822,185 - +5.0
2,822,185 - +4.1
2,822,185 - +3.4
2,822,538 + PS417_12900 0.12 -0.6
2,822,538 + PS417_12900 0.12 -1.7
2,822,538 + PS417_12900 0.12 +0.5
2,822,538 + PS417_12900 0.12 -1.7
2,822,539 - PS417_12900 0.12 +0.2
2,822,692 - PS417_12900 0.43 -1.2
2,822,980 - -0.4
2,823,063 + -0.0
2,823,101 - +0.1

Or see this region's nucleotide sequence