Experiment: L-Valine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01180 and PS417_01185 overlap by 4 nucleotides PS417_01185 and PS417_01190 are separated by 13 nucleotides PS417_01190 and PS417_01195 are separated by 115 nucleotides
PS417_01180: PS417_01180 - ribosomal protein S6 modification protein, at 260,706 to 261,611
_01180
PS417_01185: PS417_01185 - ribosomal protein S6 modification protein, at 261,608 to 262,090
_01185
PS417_01190: PS417_01190 - diguanylate phosphodiesterase, at 262,104 to 262,883
_01190
PS417_01195: PS417_01195 - RNA-binding protein S4, at 262,999 to 263,406
_01195
Position (kb) 261
262
263 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 260.615 kb on + strand at 260.615 kb on + strand at 260.615 kb on + strand at 260.616 kb on - strand at 260.732 kb on + strand at 260.733 kb on - strand at 261.076 kb on + strand, within PS417_01180 at 261.301 kb on - strand, within PS417_01180 at 261.397 kb on + strand, within PS417_01180 at 261.397 kb on + strand, within PS417_01180 at 261.397 kb on + strand, within PS417_01180 at 261.398 kb on - strand, within PS417_01180 at 261.406 kb on - strand, within PS417_01180 at 261.499 kb on + strand, within PS417_01180 at 261.499 kb on + strand, within PS417_01180 at 261.499 kb on + strand, within PS417_01180 at 261.499 kb on + strand, within PS417_01180 at 261.499 kb on + strand, within PS417_01180 at 261.500 kb on - strand, within PS417_01180 at 261.574 kb on + strand at 261.574 kb on + strand at 261.574 kb on + strand at 261.666 kb on + strand, within PS417_01185 at 261.666 kb on + strand, within PS417_01185 at 261.666 kb on + strand, within PS417_01185 at 261.666 kb on + strand, within PS417_01185 at 261.813 kb on + strand, within PS417_01185 at 261.813 kb on + strand, within PS417_01185 at 261.813 kb on + strand, within PS417_01185 at 261.814 kb on - strand, within PS417_01185 at 261.814 kb on - strand, within PS417_01185 at 262.388 kb on - strand, within PS417_01190 at 262.465 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.470 kb on - strand, within PS417_01190 at 262.473 kb on + strand, within PS417_01190 at 262.473 kb on + strand, within PS417_01190 at 262.474 kb on - strand, within PS417_01190 at 262.474 kb on - strand, within PS417_01190 at 262.474 kb on - strand, within PS417_01190 at 262.474 kb on - strand, within PS417_01190 at 262.523 kb on + strand, within PS417_01190 at 262.523 kb on + strand, within PS417_01190 at 262.523 kb on + strand, within PS417_01190 at 262.523 kb on + strand, within PS417_01190 at 262.523 kb on + strand, within PS417_01190 at 262.524 kb on - strand, within PS417_01190 at 262.575 kb on + strand, within PS417_01190 at 262.575 kb on + strand, within PS417_01190 at 262.576 kb on - strand, within PS417_01190 at 262.649 kb on + strand, within PS417_01190 at 262.701 kb on + strand, within PS417_01190 at 262.888 kb on + strand at 262.889 kb on - strand at 262.909 kb on + strand at 262.909 kb on + strand at 262.909 kb on + strand at 262.910 kb on - strand at 262.923 kb on + strand at 262.923 kb on + strand at 262.924 kb on - strand at 263.065 kb on + strand, within PS417_01195 at 263.066 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (C) remove 260,615 + -1.1 260,615 + +0.3 260,615 + +0.3 260,616 - +0.2 260,732 + -2.8 260,733 - -1.5 261,076 + PS417_01180 0.41 -2.6 261,301 - PS417_01180 0.66 -0.1 261,397 + PS417_01180 0.76 -2.4 261,397 + PS417_01180 0.76 -1.2 261,397 + PS417_01180 0.76 -0.1 261,398 - PS417_01180 0.76 -1.0 261,406 - PS417_01180 0.77 -3.3 261,499 + PS417_01180 0.88 -2.5 261,499 + PS417_01180 0.88 -2.7 261,499 + PS417_01180 0.88 -3.3 261,499 + PS417_01180 0.88 -3.4 261,499 + PS417_01180 0.88 -2.1 261,500 - PS417_01180 0.88 -4.0 261,574 + -3.1 261,574 + -4.1 261,574 + -2.1 261,666 + PS417_01185 0.12 -1.7 261,666 + PS417_01185 0.12 -0.7 261,666 + PS417_01185 0.12 -3.5 261,666 + PS417_01185 0.12 -1.9 261,813 + PS417_01185 0.42 -0.9 261,813 + PS417_01185 0.42 +0.9 261,813 + PS417_01185 0.42 +0.8 261,814 - PS417_01185 0.43 -1.4 261,814 - PS417_01185 0.43 -1.1 262,388 - PS417_01190 0.36 -0.1 262,465 + PS417_01190 0.46 +0.5 262,469 + PS417_01190 0.47 -0.7 262,469 + PS417_01190 0.47 -0.9 262,469 + PS417_01190 0.47 -0.5 262,469 + PS417_01190 0.47 -2.0 262,469 + PS417_01190 0.47 -0.5 262,469 + PS417_01190 0.47 -1.4 262,469 + PS417_01190 0.47 -2.2 262,469 + PS417_01190 0.47 -3.3 262,469 + PS417_01190 0.47 -0.6 262,470 - PS417_01190 0.47 +0.7 262,473 + PS417_01190 0.47 -1.3 262,473 + PS417_01190 0.47 -1.3 262,474 - PS417_01190 0.47 +2.2 262,474 - PS417_01190 0.47 +1.4 262,474 - PS417_01190 0.47 +1.3 262,474 - PS417_01190 0.47 +2.1 262,523 + PS417_01190 0.54 -0.8 262,523 + PS417_01190 0.54 -1.3 262,523 + PS417_01190 0.54 +0.3 262,523 + PS417_01190 0.54 -1.4 262,523 + PS417_01190 0.54 +0.5 262,524 - PS417_01190 0.54 +0.1 262,575 + PS417_01190 0.60 -0.7 262,575 + PS417_01190 0.60 +0.5 262,576 - PS417_01190 0.61 +0.3 262,649 + PS417_01190 0.70 -1.3 262,701 + PS417_01190 0.77 -1.3 262,888 + -2.3 262,889 - +0.3 262,909 + -0.9 262,909 + -0.5 262,909 + -0.0 262,910 - +4.8 262,923 + +1.9 262,923 + +1.0 262,924 - -0.1 263,065 + PS417_01195 0.16 -1.4 263,066 - +0.9
Or see this region's nucleotide sequence