Strain Fitness in Pseudomonas simiae WCS417 around PS417_01185

Experiment: L-Valine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01180 and PS417_01185 overlap by 4 nucleotidesPS417_01185 and PS417_01190 are separated by 13 nucleotidesPS417_01190 and PS417_01195 are separated by 115 nucleotides PS417_01180: PS417_01180 - ribosomal protein S6 modification protein, at 260,706 to 261,611 _01180 PS417_01185: PS417_01185 - ribosomal protein S6 modification protein, at 261,608 to 262,090 _01185 PS417_01190: PS417_01190 - diguanylate phosphodiesterase, at 262,104 to 262,883 _01190 PS417_01195: PS417_01195 - RNA-binding protein S4, at 262,999 to 263,406 _01195 Position (kb) 261 262 263Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 260.615 kb on + strandat 260.615 kb on + strandat 260.615 kb on + strandat 260.616 kb on - strandat 260.732 kb on + strandat 260.733 kb on - strandat 261.076 kb on + strand, within PS417_01180at 261.301 kb on - strand, within PS417_01180at 261.397 kb on + strand, within PS417_01180at 261.397 kb on + strand, within PS417_01180at 261.397 kb on + strand, within PS417_01180at 261.398 kb on - strand, within PS417_01180at 261.406 kb on - strand, within PS417_01180at 261.499 kb on + strand, within PS417_01180at 261.499 kb on + strand, within PS417_01180at 261.499 kb on + strand, within PS417_01180at 261.499 kb on + strand, within PS417_01180at 261.499 kb on + strand, within PS417_01180at 261.500 kb on - strand, within PS417_01180at 261.574 kb on + strandat 261.574 kb on + strandat 261.574 kb on + strandat 261.666 kb on + strand, within PS417_01185at 261.666 kb on + strand, within PS417_01185at 261.666 kb on + strand, within PS417_01185at 261.666 kb on + strand, within PS417_01185at 261.813 kb on + strand, within PS417_01185at 261.813 kb on + strand, within PS417_01185at 261.813 kb on + strand, within PS417_01185at 261.814 kb on - strand, within PS417_01185at 261.814 kb on - strand, within PS417_01185at 262.388 kb on - strand, within PS417_01190at 262.465 kb on + strand, within PS417_01190at 262.469 kb on + strand, within PS417_01190at 262.469 kb on + strand, within PS417_01190at 262.469 kb on + strand, within PS417_01190at 262.469 kb on + strand, within PS417_01190at 262.469 kb on + strand, within PS417_01190at 262.469 kb on + strand, within PS417_01190at 262.469 kb on + strand, within PS417_01190at 262.469 kb on + strand, within PS417_01190at 262.469 kb on + strand, within PS417_01190at 262.470 kb on - strand, within PS417_01190at 262.473 kb on + strand, within PS417_01190at 262.473 kb on + strand, within PS417_01190at 262.474 kb on - strand, within PS417_01190at 262.474 kb on - strand, within PS417_01190at 262.474 kb on - strand, within PS417_01190at 262.474 kb on - strand, within PS417_01190at 262.523 kb on + strand, within PS417_01190at 262.523 kb on + strand, within PS417_01190at 262.523 kb on + strand, within PS417_01190at 262.523 kb on + strand, within PS417_01190at 262.523 kb on + strand, within PS417_01190at 262.524 kb on - strand, within PS417_01190at 262.575 kb on + strand, within PS417_01190at 262.575 kb on + strand, within PS417_01190at 262.576 kb on - strand, within PS417_01190at 262.649 kb on + strand, within PS417_01190at 262.701 kb on + strand, within PS417_01190at 262.888 kb on + strandat 262.889 kb on - strandat 262.909 kb on + strandat 262.909 kb on + strandat 262.909 kb on + strandat 262.910 kb on - strandat 262.923 kb on + strandat 262.923 kb on + strandat 262.924 kb on - strandat 263.065 kb on + strand, within PS417_01195at 263.066 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
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260,615 + -1.1
260,615 + +0.3
260,615 + +0.3
260,616 - +0.2
260,732 + -2.8
260,733 - -1.5
261,076 + PS417_01180 0.41 -2.6
261,301 - PS417_01180 0.66 -0.1
261,397 + PS417_01180 0.76 -2.4
261,397 + PS417_01180 0.76 -1.2
261,397 + PS417_01180 0.76 -0.1
261,398 - PS417_01180 0.76 -1.0
261,406 - PS417_01180 0.77 -3.3
261,499 + PS417_01180 0.88 -2.5
261,499 + PS417_01180 0.88 -2.7
261,499 + PS417_01180 0.88 -3.3
261,499 + PS417_01180 0.88 -3.4
261,499 + PS417_01180 0.88 -2.1
261,500 - PS417_01180 0.88 -4.0
261,574 + -3.1
261,574 + -4.1
261,574 + -2.1
261,666 + PS417_01185 0.12 -1.7
261,666 + PS417_01185 0.12 -0.7
261,666 + PS417_01185 0.12 -3.5
261,666 + PS417_01185 0.12 -1.9
261,813 + PS417_01185 0.42 -0.9
261,813 + PS417_01185 0.42 +0.9
261,813 + PS417_01185 0.42 +0.8
261,814 - PS417_01185 0.43 -1.4
261,814 - PS417_01185 0.43 -1.1
262,388 - PS417_01190 0.36 -0.1
262,465 + PS417_01190 0.46 +0.5
262,469 + PS417_01190 0.47 -0.7
262,469 + PS417_01190 0.47 -0.9
262,469 + PS417_01190 0.47 -0.5
262,469 + PS417_01190 0.47 -2.0
262,469 + PS417_01190 0.47 -0.5
262,469 + PS417_01190 0.47 -1.4
262,469 + PS417_01190 0.47 -2.2
262,469 + PS417_01190 0.47 -3.3
262,469 + PS417_01190 0.47 -0.6
262,470 - PS417_01190 0.47 +0.7
262,473 + PS417_01190 0.47 -1.3
262,473 + PS417_01190 0.47 -1.3
262,474 - PS417_01190 0.47 +2.2
262,474 - PS417_01190 0.47 +1.4
262,474 - PS417_01190 0.47 +1.3
262,474 - PS417_01190 0.47 +2.1
262,523 + PS417_01190 0.54 -0.8
262,523 + PS417_01190 0.54 -1.3
262,523 + PS417_01190 0.54 +0.3
262,523 + PS417_01190 0.54 -1.4
262,523 + PS417_01190 0.54 +0.5
262,524 - PS417_01190 0.54 +0.1
262,575 + PS417_01190 0.60 -0.7
262,575 + PS417_01190 0.60 +0.5
262,576 - PS417_01190 0.61 +0.3
262,649 + PS417_01190 0.70 -1.3
262,701 + PS417_01190 0.77 -1.3
262,888 + -2.3
262,889 - +0.3
262,909 + -0.9
262,909 + -0.5
262,909 + -0.0
262,910 - +4.8
262,923 + +1.9
262,923 + +1.0
262,924 - -0.1
263,065 + PS417_01195 0.16 -1.4
263,066 - +0.9

Or see this region's nucleotide sequence