Experiment: L-Valine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_08785 and PS417_08790 are separated by 130 nucleotides PS417_08790 and PS417_08795 overlap by 11 nucleotides
PS417_08785: PS417_08785 - urea transporter, at 1,910,908 to 1,911,783
_08785
PS417_08790: PS417_08790 - pyruvate kinase, at 1,911,914 to 1,913,329
_08790
PS417_08795: PS417_08795 - hydroxypyruvate reductase, at 1,913,319 to 1,914,599
_08795
Position (kb)
1911
1912
1913
1914 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1911.125 kb on + strand, within PS417_08785 at 1911.126 kb on - strand, within PS417_08785 at 1911.410 kb on + strand, within PS417_08785 at 1911.560 kb on + strand, within PS417_08785 at 1911.561 kb on - strand, within PS417_08785 at 1912.055 kb on + strand at 1912.055 kb on + strand at 1912.055 kb on + strand at 1912.055 kb on + strand at 1912.056 kb on - strand, within PS417_08790 at 1912.203 kb on + strand, within PS417_08790 at 1912.203 kb on + strand, within PS417_08790 at 1912.234 kb on + strand, within PS417_08790 at 1912.543 kb on + strand, within PS417_08790 at 1912.543 kb on + strand, within PS417_08790 at 1912.745 kb on + strand, within PS417_08790 at 1912.862 kb on - strand, within PS417_08790 at 1912.890 kb on - strand, within PS417_08790 at 1913.563 kb on + strand, within PS417_08795 at 1913.563 kb on + strand, within PS417_08795 at 1914.064 kb on + strand, within PS417_08795 at 1914.064 kb on + strand, within PS417_08795 at 1914.066 kb on + strand, within PS417_08795 at 1914.067 kb on - strand, within PS417_08795 at 1914.067 kb on - strand, within PS417_08795
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (C) remove 1,911,125 + PS417_08785 0.25 +0.3 1,911,126 - PS417_08785 0.25 +1.6 1,911,410 + PS417_08785 0.57 -2.0 1,911,560 + PS417_08785 0.74 +0.5 1,911,561 - PS417_08785 0.75 -0.4 1,912,055 + +1.7 1,912,055 + -2.7 1,912,055 + -3.0 1,912,055 + -0.2 1,912,056 - PS417_08790 0.10 -0.9 1,912,203 + PS417_08790 0.20 -0.3 1,912,203 + PS417_08790 0.20 -3.0 1,912,234 + PS417_08790 0.23 +1.4 1,912,543 + PS417_08790 0.44 -1.2 1,912,543 + PS417_08790 0.44 +0.2 1,912,745 + PS417_08790 0.59 -1.4 1,912,862 - PS417_08790 0.67 +1.2 1,912,890 - PS417_08790 0.69 -0.8 1,913,563 + PS417_08795 0.19 -0.1 1,913,563 + PS417_08795 0.19 -0.9 1,914,064 + PS417_08795 0.58 +0.5 1,914,064 + PS417_08795 0.58 -1.1 1,914,066 + PS417_08795 0.58 -0.9 1,914,067 - PS417_08795 0.58 +0.5 1,914,067 - PS417_08795 0.58 +0.9
Or see this region's nucleotide sequence