Experiment: L-Valine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00765 and PS417_00770 are separated by 904 nucleotides PS417_00770 and PS417_00775 are separated by 63 nucleotides PS417_00775 and PS417_00780 are separated by 15 nucleotides
PS417_00765: PS417_00765 - filamentous hemagglutinin, at 163,228 to 170,496
_00765
PS417_00770: PS417_00770 - autotransporter, at 171,401 to 173,989
_00770
PS417_00775: PS417_00775 - hypothetical protein, at 174,053 to 174,640
_00775
PS417_00780: PS417_00780 - hypothetical protein, at 174,656 to 175,267
_00780
Position (kb) 171
172
173
174 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 170.456 kb on - strand at 170.508 kb on + strand at 170.514 kb on + strand at 170.517 kb on + strand at 170.587 kb on + strand at 170.588 kb on - strand at 170.642 kb on + strand at 170.642 kb on + strand at 170.678 kb on - strand at 170.715 kb on + strand at 170.784 kb on - strand at 170.917 kb on + strand at 170.917 kb on + strand at 171.080 kb on + strand at 171.080 kb on + strand at 171.081 kb on - strand at 171.119 kb on + strand at 171.212 kb on + strand at 171.311 kb on + strand at 171.311 kb on + strand at 171.312 kb on - strand at 171.344 kb on - strand at 171.365 kb on - strand at 171.384 kb on - strand at 171.396 kb on + strand at 171.521 kb on + strand at 171.521 kb on + strand at 171.522 kb on - strand at 171.647 kb on - strand at 171.699 kb on - strand, within PS417_00770 at 171.907 kb on + strand, within PS417_00770 at 171.907 kb on + strand, within PS417_00770 at 171.907 kb on + strand, within PS417_00770 at 171.907 kb on + strand, within PS417_00770 at 171.907 kb on + strand, within PS417_00770 at 171.908 kb on - strand, within PS417_00770 at 171.908 kb on - strand, within PS417_00770 at 171.911 kb on + strand, within PS417_00770 at 171.911 kb on + strand, within PS417_00770 at 172.193 kb on + strand, within PS417_00770 at 172.193 kb on + strand, within PS417_00770 at 172.194 kb on - strand, within PS417_00770 at 172.194 kb on - strand, within PS417_00770 at 172.194 kb on - strand, within PS417_00770 at 172.636 kb on + strand, within PS417_00770 at 172.636 kb on + strand, within PS417_00770 at 172.636 kb on + strand, within PS417_00770 at 172.674 kb on - strand, within PS417_00770 at 172.772 kb on + strand, within PS417_00770 at 172.773 kb on - strand, within PS417_00770 at 172.853 kb on + strand, within PS417_00770 at 172.984 kb on - strand, within PS417_00770 at 173.039 kb on - strand, within PS417_00770 at 173.324 kb on + strand, within PS417_00770 at 173.331 kb on - strand, within PS417_00770 at 173.331 kb on - strand, within PS417_00770 at 173.492 kb on - strand, within PS417_00770 at 173.547 kb on - strand, within PS417_00770 at 173.624 kb on + strand, within PS417_00770 at 173.672 kb on + strand, within PS417_00770 at 173.807 kb on + strand at 173.808 kb on - strand at 173.808 kb on - strand at 173.860 kb on + strand at 173.861 kb on - strand at 173.861 kb on - strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.865 kb on - strand at 173.865 kb on - strand at 173.865 kb on - strand at 173.865 kb on - strand at 173.888 kb on + strand at 173.889 kb on - strand at 173.889 kb on - strand at 173.922 kb on - strand at 173.922 kb on - strand at 173.988 kb on - strand at 173.997 kb on + strand at 173.997 kb on + strand at 174.005 kb on + strand at 174.005 kb on + strand at 174.005 kb on + strand at 174.006 kb on - strand at 174.088 kb on + strand at 174.088 kb on + strand at 174.313 kb on - strand, within PS417_00775 at 174.313 kb on - strand, within PS417_00775 at 174.345 kb on + strand, within PS417_00775 at 174.345 kb on + strand at 174.345 kb on + strand, within PS417_00775 at 174.345 kb on + strand, within PS417_00775 at 174.345 kb on + strand, within PS417_00775 at 174.345 kb on + strand, within PS417_00775 at 174.346 kb on - strand, within PS417_00775 at 174.346 kb on - strand, within PS417_00775 at 174.346 kb on - strand, within PS417_00775 at 174.493 kb on + strand, within PS417_00775 at 174.494 kb on - strand, within PS417_00775 at 174.494 kb on - strand, within PS417_00775 at 174.494 kb on - strand, within PS417_00775 at 174.501 kb on + strand, within PS417_00775 at 174.501 kb on + strand, within PS417_00775 at 174.501 kb on + strand, within PS417_00775 at 174.501 kb on + strand, within PS417_00775 at 174.502 kb on - strand, within PS417_00775 at 174.502 kb on - strand, within PS417_00775 at 174.502 kb on - strand, within PS417_00775 at 174.657 kb on + strand at 174.757 kb on - strand, within PS417_00780 at 174.757 kb on - strand, within PS417_00780 at 174.770 kb on - strand, within PS417_00780 at 174.864 kb on + strand, within PS417_00780 at 174.864 kb on + strand, within PS417_00780 at 174.864 kb on + strand, within PS417_00780 at 174.865 kb on - strand, within PS417_00780 at 174.865 kb on - strand, within PS417_00780 at 174.865 kb on - strand, within PS417_00780 at 174.961 kb on + strand, within PS417_00780
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (C) remove 170,456 - +2.3 170,508 + -0.2 170,514 + +0.3 170,517 + -0.4 170,587 + -0.5 170,588 - +0.0 170,642 + -1.4 170,642 + -1.0 170,678 - -0.7 170,715 + +0.3 170,784 - -3.0 170,917 + +0.0 170,917 + -0.3 171,080 + -0.7 171,080 + -0.4 171,081 - -0.1 171,119 + +0.9 171,212 + -1.2 171,311 + -0.7 171,311 + -1.3 171,312 - +0.3 171,344 - +0.6 171,365 - -0.6 171,384 - +2.6 171,396 + +0.5 171,521 + -1.7 171,521 + +0.3 171,522 - +2.4 171,647 - +0.6 171,699 - PS417_00770 0.12 +0.5 171,907 + PS417_00770 0.20 +1.0 171,907 + PS417_00770 0.20 -1.0 171,907 + PS417_00770 0.20 +2.0 171,907 + PS417_00770 0.20 -1.5 171,907 + PS417_00770 0.20 +0.0 171,908 - PS417_00770 0.20 -0.4 171,908 - PS417_00770 0.20 -2.5 171,911 + PS417_00770 0.20 -2.1 171,911 + PS417_00770 0.20 +0.3 172,193 + PS417_00770 0.31 -2.9 172,193 + PS417_00770 0.31 +1.7 172,194 - PS417_00770 0.31 +1.4 172,194 - PS417_00770 0.31 -1.4 172,194 - PS417_00770 0.31 +0.3 172,636 + PS417_00770 0.48 -2.8 172,636 + PS417_00770 0.48 +2.5 172,636 + PS417_00770 0.48 -0.7 172,674 - PS417_00770 0.49 -2.0 172,772 + PS417_00770 0.53 +0.3 172,773 - PS417_00770 0.53 -0.4 172,853 + PS417_00770 0.56 +1.1 172,984 - PS417_00770 0.61 +1.1 173,039 - PS417_00770 0.63 -1.6 173,324 + PS417_00770 0.74 +1.6 173,331 - PS417_00770 0.75 -1.7 173,331 - PS417_00770 0.75 +0.8 173,492 - PS417_00770 0.81 -0.5 173,547 - PS417_00770 0.83 +1.1 173,624 + PS417_00770 0.86 +1.7 173,672 + PS417_00770 0.88 +1.7 173,807 + +0.9 173,808 - +1.2 173,808 - +0.1 173,860 + +0.6 173,861 - -1.2 173,861 - +0.5 173,864 + +0.2 173,864 + -0.9 173,864 + +1.2 173,864 + +0.5 173,864 + +0.7 173,864 + +0.6 173,864 + +0.9 173,864 + +0.2 173,864 + -1.4 173,865 - -3.0 173,865 - +2.2 173,865 - -0.3 173,865 - +1.6 173,888 + -0.7 173,889 - -0.4 173,889 - +0.4 173,922 - -0.6 173,922 - -0.2 173,988 - +1.0 173,997 + -1.2 173,997 + -1.2 174,005 + +1.1 174,005 + +0.7 174,005 + +0.1 174,006 - -2.7 174,088 + -0.7 174,088 + -0.1 174,313 - PS417_00775 0.44 -0.7 174,313 - PS417_00775 0.44 +0.7 174,345 + PS417_00775 0.50 -0.8 174,345 + +2.9 174,345 + PS417_00775 0.50 -0.1 174,345 + PS417_00775 0.50 -2.2 174,345 + PS417_00775 0.50 +0.2 174,345 + PS417_00775 0.50 -1.1 174,346 - PS417_00775 0.50 -2.5 174,346 - PS417_00775 0.50 -0.1 174,346 - PS417_00775 0.50 -0.0 174,493 + PS417_00775 0.75 +0.4 174,494 - PS417_00775 0.75 -1.5 174,494 - PS417_00775 0.75 +0.1 174,494 - PS417_00775 0.75 -0.4 174,501 + PS417_00775 0.76 -1.1 174,501 + PS417_00775 0.76 +1.2 174,501 + PS417_00775 0.76 -1.1 174,501 + PS417_00775 0.76 -0.1 174,502 - PS417_00775 0.76 -1.9 174,502 - PS417_00775 0.76 +0.5 174,502 - PS417_00775 0.76 -0.8 174,657 + +0.4 174,757 - PS417_00780 0.17 +1.6 174,757 - PS417_00780 0.17 +1.6 174,770 - PS417_00780 0.19 +0.4 174,864 + PS417_00780 0.34 +2.0 174,864 + PS417_00780 0.34 +1.9 174,864 + PS417_00780 0.34 +1.3 174,865 - PS417_00780 0.34 +0.9 174,865 - PS417_00780 0.34 +0.1 174,865 - PS417_00780 0.34 -2.0 174,961 + PS417_00780 0.50 -1.1
Or see this region's nucleotide sequence