Strain Fitness in Pseudomonas simiae WCS417 around PS417_07070

Experiment: L-Valine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_07065 and PS417_07070 are separated by 1 nucleotidesPS417_07070 and PS417_07075 are separated by 164 nucleotides PS417_07065: PS417_07065 - tripartite tricarboxylate transporter TctA, at 1,563,602 to 1,565,116 _07065 PS417_07070: PS417_07070 - membrane protein, at 1,565,118 to 1,565,576 _07070 PS417_07075: PS417_07075 - tricarboxylic transport membrane protein, at 1,565,741 to 1,566,724 _07075 Position (kb) 1565 1566Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1564.276 kb on - strand, within PS417_07065at 1564.276 kb on - strand, within PS417_07065at 1564.276 kb on - strand, within PS417_07065at 1564.317 kb on - strand, within PS417_07065at 1564.388 kb on - strand, within PS417_07065at 1564.388 kb on - strand, within PS417_07065at 1564.388 kb on - strand, within PS417_07065at 1565.012 kb on + strandat 1565.064 kb on + strandat 1565.064 kb on + strandat 1565.064 kb on + strandat 1565.064 kb on + strandat 1565.101 kb on - strandat 1565.110 kb on + strandat 1565.110 kb on + strandat 1565.111 kb on - strandat 1565.419 kb on + strand, within PS417_07070at 1565.419 kb on + strand, within PS417_07070at 1565.419 kb on + strand, within PS417_07070at 1565.419 kb on + strand, within PS417_07070at 1565.420 kb on - strand, within PS417_07070at 1565.420 kb on - strand, within PS417_07070at 1565.420 kb on - strand, within PS417_07070at 1565.568 kb on + strandat 1565.568 kb on + strandat 1565.568 kb on + strandat 1565.568 kb on + strandat 1565.569 kb on - strandat 1565.569 kb on - strandat 1565.569 kb on - strandat 1565.621 kb on + strandat 1565.635 kb on - strandat 1565.635 kb on - strandat 1565.728 kb on + strandat 1565.803 kb on - strandat 1565.803 kb on - strandat 1565.916 kb on + strand, within PS417_07075at 1565.946 kb on + strand, within PS417_07075at 1566.172 kb on - strand, within PS417_07075at 1566.496 kb on - strand, within PS417_07075at 1566.525 kb on + strand, within PS417_07075at 1566.526 kb on - strand, within PS417_07075

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
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1,564,276 - PS417_07065 0.44 -2.1
1,564,276 - PS417_07065 0.44 +0.9
1,564,276 - PS417_07065 0.44 +0.3
1,564,317 - PS417_07065 0.47 -1.8
1,564,388 - PS417_07065 0.52 -0.3
1,564,388 - PS417_07065 0.52 +1.5
1,564,388 - PS417_07065 0.52 +1.8
1,565,012 + +0.3
1,565,064 + +1.5
1,565,064 + +0.3
1,565,064 + +0.5
1,565,064 + -1.3
1,565,101 - +1.0
1,565,110 + +0.2
1,565,110 + +1.5
1,565,111 - +0.5
1,565,419 + PS417_07070 0.66 +0.3
1,565,419 + PS417_07070 0.66 -1.6
1,565,419 + PS417_07070 0.66 -1.2
1,565,419 + PS417_07070 0.66 +0.2
1,565,420 - PS417_07070 0.66 -2.0
1,565,420 - PS417_07070 0.66 -2.4
1,565,420 - PS417_07070 0.66 -2.3
1,565,568 + +0.5
1,565,568 + -0.1
1,565,568 + -0.4
1,565,568 + +0.5
1,565,569 - -2.9
1,565,569 - +1.1
1,565,569 - -1.1
1,565,621 + +0.2
1,565,635 - -0.1
1,565,635 - -1.5
1,565,728 + +1.7
1,565,803 - -0.2
1,565,803 - -4.1
1,565,916 + PS417_07075 0.18 -1.3
1,565,946 + PS417_07075 0.21 +1.0
1,566,172 - PS417_07075 0.44 -0.9
1,566,496 - PS417_07075 0.77 +0.2
1,566,525 + PS417_07075 0.80 +0.1
1,566,526 - PS417_07075 0.80 +0.9

Or see this region's nucleotide sequence