Strain Fitness in Pseudomonas simiae WCS417 around PS417_06155

Experiment: L-Valine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06145 and PS417_06150 are separated by 54 nucleotidesPS417_06150 and PS417_06155 overlap by 1 nucleotidesPS417_06155 and PS417_06160 are separated by 255 nucleotides PS417_06145: PS417_06145 - hypothetical protein, at 1,362,107 to 1,362,484 _06145 PS417_06150: PS417_06150 - SAM-dependent methlyltransferase, at 1,362,539 to 1,363,348 _06150 PS417_06155: PS417_06155 - succinyl-diaminopimelate desuccinylase, at 1,363,348 to 1,364,499 _06155 PS417_06160: PS417_06160 - beta-(1-3)-glucosyl transferase, at 1,364,755 to 1,367,346 _06160 Position (kb) 1363 1364 1365Strain fitness (log2 ratio) -1 0 1 2 3at 1362.536 kb on + strandat 1362.541 kb on - strandat 1362.768 kb on + strand, within PS417_06150at 1362.769 kb on - strand, within PS417_06150at 1363.012 kb on + strand, within PS417_06150at 1363.069 kb on - strand, within PS417_06150at 1363.251 kb on + strand, within PS417_06150at 1364.522 kb on - strandat 1364.705 kb on + strandat 1364.708 kb on - strandat 1364.736 kb on + strandat 1364.907 kb on - strandat 1365.045 kb on - strand, within PS417_06160at 1365.276 kb on + strand, within PS417_06160at 1365.277 kb on - strand, within PS417_06160at 1365.277 kb on - strand, within PS417_06160at 1365.404 kb on + strand, within PS417_06160at 1365.479 kb on + strand, within PS417_06160at 1365.480 kb on - strand, within PS417_06160at 1365.482 kb on + strand, within PS417_06160at 1365.482 kb on + strand, within PS417_06160at 1365.483 kb on - strand, within PS417_06160

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
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1,362,536 + +1.5
1,362,541 - +0.6
1,362,768 + PS417_06150 0.28 +2.7
1,362,769 - PS417_06150 0.28 +0.6
1,363,012 + PS417_06150 0.58 -0.4
1,363,069 - PS417_06150 0.65 +0.4
1,363,251 + PS417_06150 0.88 +0.2
1,364,522 - +3.4
1,364,705 + +0.7
1,364,708 - -0.5
1,364,736 + +0.6
1,364,907 - +3.1
1,365,045 - PS417_06160 0.11 +1.4
1,365,276 + PS417_06160 0.20 +0.1
1,365,277 - PS417_06160 0.20 -0.4
1,365,277 - PS417_06160 0.20 -1.4
1,365,404 + PS417_06160 0.25 +1.9
1,365,479 + PS417_06160 0.28 -0.1
1,365,480 - PS417_06160 0.28 -0.8
1,365,482 + PS417_06160 0.28 +2.7
1,365,482 + PS417_06160 0.28 -0.0
1,365,483 - PS417_06160 0.28 +0.3

Or see this region's nucleotide sequence