Experiment: D-Trehalose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3916 and Echvi_3917 are separated by 575 nucleotides Echvi_3917 and Echvi_3918 are separated by 357 nucleotides Echvi_3918 and Echvi_3919 are separated by 192 nucleotides
Echvi_3916: Echvi_3916 - TonB-linked outer membrane protein, SusC/RagA family, at 4,687,176 to 4,690,277
_3916
Echvi_3917: Echvi_3917 - hypothetical protein, at 4,690,853 to 4,692,214
_3917
Echvi_3918: Echvi_3918 - Histone H1-like protein Hc1., at 4,692,572 to 4,692,751
_3918
Echvi_3919: Echvi_3919 - Domain of Unknown Function (DUF1080)., at 4,692,944 to 4,693,642
_3919
Position (kb) 4690
4691
4692
4693 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4689.867 kb on + strand, within Echvi_3916 at 4689.867 kb on + strand, within Echvi_3916 at 4689.867 kb on + strand, within Echvi_3916 at 4689.867 kb on + strand, within Echvi_3916 at 4689.888 kb on + strand, within Echvi_3916 at 4689.888 kb on + strand, within Echvi_3916 at 4689.888 kb on + strand, within Echvi_3916 at 4689.888 kb on + strand, within Echvi_3916 at 4689.888 kb on + strand, within Echvi_3916 at 4689.889 kb on - strand, within Echvi_3916 at 4689.889 kb on - strand, within Echvi_3916 at 4689.889 kb on - strand, within Echvi_3916 at 4690.010 kb on + strand at 4690.010 kb on + strand at 4690.011 kb on - strand at 4690.013 kb on - strand at 4690.055 kb on + strand at 4690.056 kb on - strand at 4690.056 kb on - strand at 4690.067 kb on - strand at 4690.077 kb on + strand at 4690.077 kb on + strand at 4690.077 kb on + strand at 4690.078 kb on - strand at 4690.078 kb on - strand at 4690.078 kb on - strand at 4690.078 kb on - strand at 4690.078 kb on - strand at 4690.131 kb on + strand at 4690.132 kb on - strand at 4690.146 kb on - strand at 4690.169 kb on + strand at 4690.169 kb on + strand at 4690.223 kb on + strand at 4690.223 kb on + strand at 4690.223 kb on + strand at 4690.223 kb on + strand at 4690.223 kb on + strand at 4690.223 kb on + strand at 4690.224 kb on - strand at 4690.224 kb on - strand at 4690.224 kb on - strand at 4690.225 kb on + strand at 4690.225 kb on + strand at 4690.225 kb on + strand at 4690.225 kb on + strand at 4690.226 kb on - strand at 4690.284 kb on - strand at 4690.341 kb on + strand at 4690.377 kb on + strand at 4690.379 kb on + strand at 4690.388 kb on - strand at 4690.567 kb on + strand at 4690.707 kb on - strand at 4690.775 kb on + strand at 4690.840 kb on - strand at 4690.852 kb on + strand at 4690.858 kb on + strand at 4690.863 kb on + strand at 4690.974 kb on - strand at 4690.983 kb on + strand at 4691.024 kb on + strand, within Echvi_3917 at 4691.024 kb on + strand, within Echvi_3917 at 4691.024 kb on + strand, within Echvi_3917 at 4691.025 kb on - strand, within Echvi_3917 at 4691.025 kb on - strand, within Echvi_3917 at 4691.025 kb on - strand, within Echvi_3917 at 4691.025 kb on - strand, within Echvi_3917 at 4691.026 kb on + strand, within Echvi_3917 at 4691.026 kb on + strand, within Echvi_3917 at 4691.026 kb on + strand, within Echvi_3917 at 4691.026 kb on + strand, within Echvi_3917 at 4691.027 kb on - strand, within Echvi_3917 at 4691.027 kb on - strand, within Echvi_3917 at 4691.027 kb on - strand, within Echvi_3917 at 4691.027 kb on - strand, within Echvi_3917 at 4691.027 kb on - strand, within Echvi_3917 at 4691.027 kb on - strand, within Echvi_3917 at 4691.027 kb on - strand, within Echvi_3917 at 4691.027 kb on - strand, within Echvi_3917 at 4691.027 kb on - strand, within Echvi_3917 at 4691.027 kb on - strand, within Echvi_3917 at 4691.027 kb on - strand, within Echvi_3917 at 4691.027 kb on - strand, within Echvi_3917 at 4691.028 kb on + strand, within Echvi_3917 at 4691.028 kb on + strand, within Echvi_3917 at 4691.028 kb on + strand, within Echvi_3917 at 4691.028 kb on + strand, within Echvi_3917 at 4691.029 kb on - strand, within Echvi_3917 at 4691.029 kb on - strand, within Echvi_3917 at 4691.029 kb on - strand, within Echvi_3917 at 4691.029 kb on - strand, within Echvi_3917 at 4691.029 kb on - strand, within Echvi_3917 at 4691.040 kb on - strand, within Echvi_3917 at 4691.040 kb on - strand, within Echvi_3917 at 4691.040 kb on - strand, within Echvi_3917 at 4691.043 kb on + strand, within Echvi_3917 at 4691.071 kb on + strand, within Echvi_3917 at 4691.072 kb on - strand, within Echvi_3917 at 4691.118 kb on - strand, within Echvi_3917 at 4691.120 kb on + strand, within Echvi_3917 at 4691.121 kb on - strand, within Echvi_3917 at 4691.162 kb on + strand, within Echvi_3917 at 4691.162 kb on + strand, within Echvi_3917 at 4691.163 kb on - strand, within Echvi_3917 at 4691.163 kb on - strand, within Echvi_3917 at 4691.172 kb on - strand, within Echvi_3917 at 4691.172 kb on - strand, within Echvi_3917 at 4691.175 kb on - strand, within Echvi_3917 at 4691.198 kb on + strand, within Echvi_3917 at 4691.338 kb on + strand, within Echvi_3917 at 4691.339 kb on - strand, within Echvi_3917 at 4691.364 kb on - strand, within Echvi_3917 at 4691.398 kb on + strand, within Echvi_3917 at 4691.398 kb on + strand, within Echvi_3917 at 4691.399 kb on - strand, within Echvi_3917 at 4691.399 kb on - strand, within Echvi_3917 at 4691.401 kb on + strand, within Echvi_3917 at 4691.413 kb on + strand, within Echvi_3917 at 4691.427 kb on + strand, within Echvi_3917 at 4691.431 kb on + strand, within Echvi_3917 at 4691.431 kb on + strand, within Echvi_3917 at 4691.432 kb on - strand, within Echvi_3917 at 4691.432 kb on - strand, within Echvi_3917 at 4691.434 kb on + strand, within Echvi_3917 at 4691.434 kb on + strand, within Echvi_3917 at 4691.435 kb on - strand, within Echvi_3917 at 4691.461 kb on + strand, within Echvi_3917 at 4691.480 kb on + strand, within Echvi_3917 at 4691.481 kb on - strand, within Echvi_3917 at 4691.482 kb on + strand, within Echvi_3917 at 4691.482 kb on + strand, within Echvi_3917 at 4691.483 kb on - strand, within Echvi_3917 at 4691.505 kb on - strand, within Echvi_3917 at 4691.505 kb on - strand, within Echvi_3917 at 4691.506 kb on + strand, within Echvi_3917 at 4691.506 kb on + strand, within Echvi_3917 at 4691.506 kb on + strand, within Echvi_3917 at 4691.507 kb on - strand, within Echvi_3917 at 4691.565 kb on + strand, within Echvi_3917 at 4691.571 kb on + strand, within Echvi_3917 at 4691.572 kb on - strand, within Echvi_3917 at 4691.586 kb on + strand, within Echvi_3917 at 4691.792 kb on + strand, within Echvi_3917 at 4691.793 kb on - strand, within Echvi_3917 at 4691.800 kb on + strand, within Echvi_3917 at 4691.800 kb on + strand, within Echvi_3917 at 4691.800 kb on + strand, within Echvi_3917 at 4691.801 kb on - strand, within Echvi_3917 at 4691.807 kb on - strand, within Echvi_3917 at 4691.836 kb on + strand, within Echvi_3917 at 4691.837 kb on - strand, within Echvi_3917 at 4691.896 kb on + strand, within Echvi_3917 at 4691.900 kb on - strand, within Echvi_3917 at 4691.906 kb on + strand, within Echvi_3917 at 4692.091 kb on + strand at 4692.092 kb on - strand at 4692.125 kb on - strand at 4692.146 kb on - strand at 4692.188 kb on - strand at 4692.203 kb on - strand at 4692.206 kb on - strand at 4692.216 kb on - strand at 4692.233 kb on + strand at 4692.233 kb on + strand at 4692.239 kb on + strand at 4692.362 kb on - strand at 4692.389 kb on + strand at 4692.389 kb on + strand at 4692.390 kb on - strand at 4692.390 kb on - strand at 4692.390 kb on - strand at 4692.390 kb on - strand at 4692.487 kb on + strand at 4692.488 kb on - strand at 4692.519 kb on + strand at 4692.520 kb on - strand at 4692.550 kb on + strand at 4692.551 kb on - strand at 4692.556 kb on + strand at 4692.557 kb on - strand at 4692.565 kb on + strand at 4692.566 kb on - strand at 4692.572 kb on - strand at 4692.600 kb on + strand, within Echvi_3918 at 4692.829 kb on + strand at 4692.830 kb on - strand at 4692.843 kb on + strand at 4692.843 kb on + strand at 4692.851 kb on + strand at 4692.851 kb on + strand at 4692.853 kb on + strand at 4692.853 kb on + strand at 4692.896 kb on - strand at 4692.956 kb on + strand at 4692.964 kb on + strand at 4693.007 kb on - strand at 4693.025 kb on + strand, within Echvi_3919 at 4693.025 kb on + strand, within Echvi_3919 at 4693.078 kb on + strand, within Echvi_3919 at 4693.096 kb on + strand, within Echvi_3919 at 4693.097 kb on - strand, within Echvi_3919 at 4693.097 kb on - strand, within Echvi_3919 at 4693.097 kb on - strand, within Echvi_3919 at 4693.097 kb on - strand, within Echvi_3919 at 4693.097 kb on - strand, within Echvi_3919 at 4693.106 kb on + strand, within Echvi_3919 at 4693.107 kb on - strand, within Echvi_3919 at 4693.118 kb on + strand, within Echvi_3919 at 4693.119 kb on - strand, within Echvi_3919 at 4693.119 kb on - strand, within Echvi_3919 at 4693.205 kb on + strand, within Echvi_3919 at 4693.206 kb on - strand, within Echvi_3919
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose (C) remove 4,689,867 + Echvi_3916 0.87 -0.4 4,689,867 + Echvi_3916 0.87 -0.5 4,689,867 + Echvi_3916 0.87 -0.1 4,689,867 + Echvi_3916 0.87 -0.0 4,689,888 + Echvi_3916 0.87 -0.7 4,689,888 + Echvi_3916 0.87 +0.4 4,689,888 + Echvi_3916 0.87 +1.0 4,689,888 + Echvi_3916 0.87 -0.1 4,689,888 + Echvi_3916 0.87 +0.6 4,689,889 - Echvi_3916 0.87 -0.3 4,689,889 - Echvi_3916 0.87 -1.3 4,689,889 - Echvi_3916 0.87 -0.3 4,690,010 + +0.5 4,690,010 + -0.6 4,690,011 - -0.3 4,690,013 - -0.0 4,690,055 + -1.8 4,690,056 - -0.5 4,690,056 - -0.1 4,690,067 - +0.9 4,690,077 + -1.6 4,690,077 + +1.6 4,690,077 + -0.1 4,690,078 - -1.0 4,690,078 - -0.4 4,690,078 - -0.4 4,690,078 - -0.4 4,690,078 - +0.2 4,690,131 + +1.0 4,690,132 - -0.7 4,690,146 - +1.3 4,690,169 + -0.1 4,690,169 + -0.1 4,690,223 + +0.5 4,690,223 + -0.2 4,690,223 + +0.3 4,690,223 + -0.3 4,690,223 + -1.9 4,690,223 + -0.0 4,690,224 - +0.0 4,690,224 - +0.1 4,690,224 - -0.8 4,690,225 + +0.0 4,690,225 + -1.6 4,690,225 + -0.3 4,690,225 + +0.0 4,690,226 - +0.2 4,690,284 - +0.4 4,690,341 + +0.5 4,690,377 + +0.5 4,690,379 + +1.2 4,690,388 - -0.2 4,690,567 + -0.7 4,690,707 - -0.0 4,690,775 + -0.3 4,690,840 - +0.2 4,690,852 + -1.4 4,690,858 + -1.3 4,690,863 + +1.0 4,690,974 - +1.2 4,690,983 + +0.3 4,691,024 + Echvi_3917 0.13 -0.6 4,691,024 + Echvi_3917 0.13 +0.7 4,691,024 + Echvi_3917 0.13 -0.3 4,691,025 - Echvi_3917 0.13 +1.6 4,691,025 - Echvi_3917 0.13 -0.9 4,691,025 - Echvi_3917 0.13 -0.3 4,691,025 - Echvi_3917 0.13 -0.2 4,691,026 + Echvi_3917 0.13 +0.2 4,691,026 + Echvi_3917 0.13 -1.2 4,691,026 + Echvi_3917 0.13 +0.0 4,691,026 + Echvi_3917 0.13 -0.9 4,691,027 - Echvi_3917 0.13 -1.0 4,691,027 - Echvi_3917 0.13 +1.4 4,691,027 - Echvi_3917 0.13 -0.3 4,691,027 - Echvi_3917 0.13 -1.0 4,691,027 - Echvi_3917 0.13 -0.6 4,691,027 - Echvi_3917 0.13 -0.8 4,691,027 - Echvi_3917 0.13 +0.6 4,691,027 - Echvi_3917 0.13 -0.2 4,691,027 - Echvi_3917 0.13 +0.0 4,691,027 - Echvi_3917 0.13 -0.4 4,691,027 - Echvi_3917 0.13 -0.1 4,691,027 - Echvi_3917 0.13 -0.4 4,691,028 + Echvi_3917 0.13 -0.3 4,691,028 + Echvi_3917 0.13 -1.0 4,691,028 + Echvi_3917 0.13 -2.6 4,691,028 + Echvi_3917 0.13 +0.3 4,691,029 - Echvi_3917 0.13 -0.5 4,691,029 - Echvi_3917 0.13 -0.2 4,691,029 - Echvi_3917 0.13 -0.3 4,691,029 - Echvi_3917 0.13 -0.2 4,691,029 - Echvi_3917 0.13 +0.9 4,691,040 - Echvi_3917 0.14 +0.2 4,691,040 - Echvi_3917 0.14 -0.4 4,691,040 - Echvi_3917 0.14 +0.2 4,691,043 + Echvi_3917 0.14 -0.1 4,691,071 + Echvi_3917 0.16 -2.0 4,691,072 - Echvi_3917 0.16 +0.0 4,691,118 - Echvi_3917 0.19 -0.1 4,691,120 + Echvi_3917 0.20 -0.6 4,691,121 - Echvi_3917 0.20 -1.2 4,691,162 + Echvi_3917 0.23 -1.0 4,691,162 + Echvi_3917 0.23 -2.6 4,691,163 - Echvi_3917 0.23 +0.2 4,691,163 - Echvi_3917 0.23 +0.1 4,691,172 - Echvi_3917 0.23 -0.8 4,691,172 - Echvi_3917 0.23 -2.0 4,691,175 - Echvi_3917 0.24 +0.3 4,691,198 + Echvi_3917 0.25 -0.8 4,691,338 + Echvi_3917 0.36 +0.9 4,691,339 - Echvi_3917 0.36 -3.1 4,691,364 - Echvi_3917 0.38 -0.2 4,691,398 + Echvi_3917 0.40 +0.1 4,691,398 + Echvi_3917 0.40 -1.7 4,691,399 - Echvi_3917 0.40 -1.0 4,691,399 - Echvi_3917 0.40 -1.2 4,691,401 + Echvi_3917 0.40 +1.0 4,691,413 + Echvi_3917 0.41 -0.1 4,691,427 + Echvi_3917 0.42 -0.1 4,691,431 + Echvi_3917 0.42 -0.6 4,691,431 + Echvi_3917 0.42 +0.3 4,691,432 - Echvi_3917 0.43 +0.4 4,691,432 - Echvi_3917 0.43 -0.0 4,691,434 + Echvi_3917 0.43 +1.9 4,691,434 + Echvi_3917 0.43 -1.2 4,691,435 - Echvi_3917 0.43 +0.6 4,691,461 + Echvi_3917 0.45 -0.5 4,691,480 + Echvi_3917 0.46 -1.0 4,691,481 - Echvi_3917 0.46 -0.7 4,691,482 + Echvi_3917 0.46 -0.2 4,691,482 + Echvi_3917 0.46 -0.1 4,691,483 - Echvi_3917 0.46 +0.2 4,691,505 - Echvi_3917 0.48 +0.6 4,691,505 - Echvi_3917 0.48 +0.9 4,691,506 + Echvi_3917 0.48 -0.2 4,691,506 + Echvi_3917 0.48 +0.2 4,691,506 + Echvi_3917 0.48 -0.7 4,691,507 - Echvi_3917 0.48 -0.1 4,691,565 + Echvi_3917 0.52 -0.7 4,691,571 + Echvi_3917 0.53 -1.0 4,691,572 - Echvi_3917 0.53 -0.3 4,691,586 + Echvi_3917 0.54 -0.7 4,691,792 + Echvi_3917 0.69 -0.8 4,691,793 - Echvi_3917 0.69 +0.1 4,691,800 + Echvi_3917 0.70 -1.5 4,691,800 + Echvi_3917 0.70 -0.9 4,691,800 + Echvi_3917 0.70 -1.2 4,691,801 - Echvi_3917 0.70 +0.4 4,691,807 - Echvi_3917 0.70 -0.9 4,691,836 + Echvi_3917 0.72 +0.2 4,691,837 - Echvi_3917 0.72 +0.1 4,691,896 + Echvi_3917 0.77 +1.2 4,691,900 - Echvi_3917 0.77 -0.5 4,691,906 + Echvi_3917 0.77 -2.2 4,692,091 + +0.2 4,692,092 - -0.6 4,692,125 - +1.1 4,692,146 - -1.1 4,692,188 - +0.4 4,692,203 - +0.4 4,692,206 - +0.2 4,692,216 - +0.6 4,692,233 + +0.6 4,692,233 + -0.4 4,692,239 + +0.3 4,692,362 - +0.7 4,692,389 + +0.4 4,692,389 + -0.3 4,692,390 - -0.0 4,692,390 - +1.1 4,692,390 - +0.0 4,692,390 - -0.2 4,692,487 + +0.7 4,692,488 - +0.4 4,692,519 + +0.3 4,692,520 - +0.0 4,692,550 + -0.6 4,692,551 - +0.0 4,692,556 + -0.4 4,692,557 - -0.8 4,692,565 + -0.4 4,692,566 - +0.9 4,692,572 - +0.1 4,692,600 + Echvi_3918 0.16 +1.3 4,692,829 + -0.0 4,692,830 - +0.6 4,692,843 + -0.5 4,692,843 + +0.2 4,692,851 + -0.7 4,692,851 + -1.2 4,692,853 + +0.2 4,692,853 + -1.5 4,692,896 - -0.0 4,692,956 + +0.2 4,692,964 + -1.2 4,693,007 - +1.0 4,693,025 + Echvi_3919 0.12 -0.2 4,693,025 + Echvi_3919 0.12 +0.7 4,693,078 + Echvi_3919 0.19 +0.1 4,693,096 + Echvi_3919 0.22 +0.8 4,693,097 - Echvi_3919 0.22 +0.6 4,693,097 - Echvi_3919 0.22 -0.2 4,693,097 - Echvi_3919 0.22 +0.7 4,693,097 - Echvi_3919 0.22 +0.6 4,693,097 - Echvi_3919 0.22 +0.4 4,693,106 + Echvi_3919 0.23 -0.7 4,693,107 - Echvi_3919 0.23 +0.5 4,693,118 + Echvi_3919 0.25 -0.4 4,693,119 - Echvi_3919 0.25 -0.4 4,693,119 - Echvi_3919 0.25 +1.4 4,693,205 + Echvi_3919 0.37 -0.6 4,693,206 - Echvi_3919 0.37 -0.7
Or see this region's nucleotide sequence