Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21435

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21430 and CA264_21435 are separated by 259 nucleotidesCA264_21435 and CA264_21440 are separated by 153 nucleotides CA264_21430: CA264_21430 - DDE transposase, at 151,502 to 152,329 _21430 CA264_21435: CA264_21435 - hypothetical protein, at 152,589 to 152,876 _21435 CA264_21440: CA264_21440 - metal transporter, at 153,030 to 154,310 _21440 Position (kb) 152 153Strain fitness (log2 ratio) -3 -2 -1 0 1at 151.600 kb on - strand, within CA264_21430at 151.603 kb on - strand, within CA264_21430at 151.616 kb on + strand, within CA264_21430at 151.617 kb on - strand, within CA264_21430at 151.618 kb on + strand, within CA264_21430at 151.618 kb on + strand, within CA264_21430at 151.618 kb on + strand, within CA264_21430at 151.619 kb on - strand, within CA264_21430at 151.619 kb on - strand, within CA264_21430at 151.619 kb on - strand, within CA264_21430at 151.624 kb on + strand, within CA264_21430at 151.624 kb on + strand, within CA264_21430at 151.624 kb on + strand, within CA264_21430at 151.700 kb on + strand, within CA264_21430at 151.701 kb on - strand, within CA264_21430at 151.704 kb on - strand, within CA264_21430at 151.783 kb on + strand, within CA264_21430at 151.798 kb on - strand, within CA264_21430at 151.811 kb on - strand, within CA264_21430at 151.909 kb on + strand, within CA264_21430at 152.094 kb on + strand, within CA264_21430at 152.144 kb on + strand, within CA264_21430at 152.144 kb on + strand, within CA264_21430at 152.150 kb on + strand, within CA264_21430at 152.151 kb on - strand, within CA264_21430at 152.151 kb on - strand, within CA264_21430at 152.184 kb on + strand, within CA264_21430at 152.188 kb on - strand, within CA264_21430at 152.341 kb on - strandat 152.341 kb on - strandat 152.341 kb on - strandat 152.373 kb on - strandat 152.377 kb on - strandat 152.377 kb on - strandat 152.394 kb on - strandat 152.399 kb on + strandat 152.425 kb on + strandat 152.441 kb on + strandat 152.441 kb on + strandat 152.447 kb on + strandat 152.526 kb on - strandat 152.526 kb on - strandat 152.526 kb on - strandat 152.637 kb on - strand, within CA264_21435at 152.693 kb on - strand, within CA264_21435at 153.115 kb on - strandat 153.310 kb on - strand, within CA264_21440at 153.456 kb on - strand, within CA264_21440at 153.619 kb on - strand, within CA264_21440at 153.765 kb on - strand, within CA264_21440

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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151,600 - CA264_21430 0.12 -0.4
151,603 - CA264_21430 0.12 +0.5
151,616 + CA264_21430 0.14 -0.3
151,617 - CA264_21430 0.14 +0.1
151,618 + CA264_21430 0.14 -0.0
151,618 + CA264_21430 0.14 +0.1
151,618 + CA264_21430 0.14 +0.6
151,619 - CA264_21430 0.14 -0.5
151,619 - CA264_21430 0.14 -1.6
151,619 - CA264_21430 0.14 -0.1
151,624 + CA264_21430 0.15 +0.1
151,624 + CA264_21430 0.15 -0.3
151,624 + CA264_21430 0.15 -0.5
151,700 + CA264_21430 0.24 +0.5
151,701 - CA264_21430 0.24 -0.3
151,704 - CA264_21430 0.24 +0.3
151,783 + CA264_21430 0.34 -1.1
151,798 - CA264_21430 0.36 -0.8
151,811 - CA264_21430 0.37 -0.6
151,909 + CA264_21430 0.49 +0.2
152,094 + CA264_21430 0.71 -0.2
152,144 + CA264_21430 0.78 -1.7
152,144 + CA264_21430 0.78 -0.3
152,150 + CA264_21430 0.78 -0.2
152,151 - CA264_21430 0.78 -2.6
152,151 - CA264_21430 0.78 -1.3
152,184 + CA264_21430 0.82 -0.3
152,188 - CA264_21430 0.83 -3.6
152,341 - -0.9
152,341 - -1.0
152,341 - -0.4
152,373 - -0.2
152,377 - -0.6
152,377 - -0.4
152,394 - -0.3
152,399 + -2.1
152,425 + -2.3
152,441 + -1.7
152,441 + -0.4
152,447 + -1.0
152,526 - -0.5
152,526 - -0.2
152,526 - -0.2
152,637 - CA264_21435 0.17 -1.7
152,693 - CA264_21435 0.36 -1.0
153,115 - -0.1
153,310 - CA264_21440 0.22 -0.5
153,456 - CA264_21440 0.33 -0.6
153,619 - CA264_21440 0.46 +0.2
153,765 - CA264_21440 0.57 -0.6

Or see this region's nucleotide sequence