Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21355

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21350 and CA264_21355 are separated by 35 nucleotidesCA264_21355 and CA264_21360 are separated by 16 nucleotides CA264_21350: CA264_21350 - nucleoside-diphosphate sugar epimerase, at 133,136 to 134,242 _21350 CA264_21355: CA264_21355 - vitamin K epoxide reductase, at 134,278 to 135,849 _21355 CA264_21360: CA264_21360 - trehalase-like protein, at 135,866 to 137,182 _21360 Position (kb) 134 135 136Strain fitness (log2 ratio) -3 -2 -1 0 1at 133.319 kb on - strand, within CA264_21350at 133.319 kb on - strand, within CA264_21350at 133.321 kb on + strand, within CA264_21350at 133.322 kb on - strand, within CA264_21350at 133.383 kb on + strand, within CA264_21350at 133.383 kb on + strand, within CA264_21350at 133.384 kb on - strand, within CA264_21350at 133.384 kb on - strand, within CA264_21350at 133.410 kb on - strand, within CA264_21350at 133.412 kb on + strand, within CA264_21350at 133.453 kb on - strand, within CA264_21350at 133.458 kb on + strand, within CA264_21350at 133.459 kb on - strandat 133.538 kb on + strand, within CA264_21350at 133.539 kb on - strand, within CA264_21350at 133.585 kb on - strand, within CA264_21350at 133.617 kb on + strand, within CA264_21350at 133.618 kb on - strand, within CA264_21350at 133.618 kb on - strand, within CA264_21350at 133.618 kb on - strand, within CA264_21350at 133.686 kb on + strand, within CA264_21350at 133.686 kb on + strand, within CA264_21350at 133.687 kb on - strand, within CA264_21350at 133.687 kb on - strand, within CA264_21350at 133.688 kb on + strand, within CA264_21350at 133.689 kb on - strand, within CA264_21350at 133.689 kb on - strand, within CA264_21350at 133.708 kb on + strand, within CA264_21350at 133.708 kb on + strand, within CA264_21350at 133.729 kb on - strand, within CA264_21350at 133.729 kb on - strand, within CA264_21350at 133.729 kb on - strand, within CA264_21350at 133.738 kb on - strand, within CA264_21350at 133.738 kb on - strand, within CA264_21350at 133.738 kb on - strand, within CA264_21350at 133.739 kb on + strand, within CA264_21350at 133.740 kb on - strand, within CA264_21350at 133.740 kb on - strand, within CA264_21350at 133.753 kb on + strand, within CA264_21350at 133.766 kb on + strand, within CA264_21350at 133.766 kb on + strand, within CA264_21350at 133.904 kb on + strand, within CA264_21350at 133.905 kb on - strand, within CA264_21350at 133.926 kb on + strand, within CA264_21350at 133.962 kb on - strand, within CA264_21350at 134.044 kb on - strand, within CA264_21350at 134.178 kb on - strandat 134.240 kb on + strandat 134.264 kb on - strandat 134.264 kb on - strandat 134.264 kb on - strandat 134.272 kb on + strandat 134.273 kb on - strandat 134.475 kb on + strand, within CA264_21355at 134.476 kb on - strand, within CA264_21355at 134.523 kb on - strand, within CA264_21355at 134.526 kb on + strand, within CA264_21355at 134.631 kb on + strand, within CA264_21355at 134.632 kb on - strand, within CA264_21355at 134.707 kb on + strand, within CA264_21355at 134.784 kb on - strand, within CA264_21355at 134.867 kb on - strand, within CA264_21355at 134.905 kb on + strand, within CA264_21355at 134.905 kb on + strand, within CA264_21355at 134.906 kb on - strand, within CA264_21355at 135.001 kb on + strand, within CA264_21355at 135.083 kb on + strand, within CA264_21355at 135.193 kb on - strand, within CA264_21355at 135.268 kb on - strand, within CA264_21355at 135.272 kb on + strand, within CA264_21355at 135.273 kb on - strand, within CA264_21355at 135.315 kb on - strand, within CA264_21355at 135.381 kb on - strand, within CA264_21355at 135.381 kb on - strand, within CA264_21355at 135.537 kb on - strand, within CA264_21355at 135.537 kb on - strand, within CA264_21355at 135.838 kb on + strandat 135.838 kb on + strandat 135.839 kb on - strandat 135.839 kb on - strandat 135.847 kb on + strandat 135.847 kb on + strandat 135.850 kb on + strandat 135.866 kb on - strandat 135.921 kb on + strandat 135.922 kb on - strandat 135.942 kb on - strandat 135.948 kb on + strandat 135.948 kb on + strandat 135.948 kb on + strandat 135.948 kb on + strandat 135.949 kb on - strandat 135.949 kb on - strandat 135.949 kb on - strandat 135.949 kb on - strandat 135.949 kb on - strandat 135.954 kb on - strandat 135.954 kb on - strandat 135.954 kb on - strandat 135.954 kb on - strandat 135.996 kb on - strandat 136.023 kb on - strand, within CA264_21360at 136.227 kb on + strand, within CA264_21360at 136.253 kb on + strand, within CA264_21360at 136.253 kb on + strand, within CA264_21360at 136.254 kb on - strand, within CA264_21360at 136.259 kb on + strand, within CA264_21360at 136.310 kb on + strand, within CA264_21360at 136.313 kb on + strand, within CA264_21360at 136.314 kb on - strand, within CA264_21360at 136.314 kb on - strand, within CA264_21360at 136.407 kb on - strand, within CA264_21360at 136.407 kb on - strand, within CA264_21360at 136.469 kb on + strand, within CA264_21360at 136.481 kb on - strand, within CA264_21360at 136.558 kb on + strand, within CA264_21360at 136.565 kb on + strand, within CA264_21360at 136.566 kb on - strand, within CA264_21360at 136.631 kb on + strand, within CA264_21360at 136.679 kb on + strand, within CA264_21360at 136.680 kb on - strand, within CA264_21360at 136.680 kb on - strand, within CA264_21360at 136.703 kb on + strand, within CA264_21360at 136.704 kb on - strand, within CA264_21360at 136.704 kb on - strand, within CA264_21360at 136.704 kb on - strand, within CA264_21360at 136.710 kb on + strand, within CA264_21360at 136.711 kb on - strand, within CA264_21360at 136.768 kb on + strand, within CA264_21360

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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133,319 - CA264_21350 0.17 -1.7
133,319 - CA264_21350 0.17 -0.5
133,321 + CA264_21350 0.17 -0.9
133,322 - CA264_21350 0.17 -1.4
133,383 + CA264_21350 0.22 +0.6
133,383 + CA264_21350 0.22 -0.8
133,384 - CA264_21350 0.22 -0.8
133,384 - CA264_21350 0.22 -1.1
133,410 - CA264_21350 0.25 -0.9
133,412 + CA264_21350 0.25 -0.3
133,453 - CA264_21350 0.29 -0.5
133,458 + CA264_21350 0.29 -0.1
133,459 - +0.3
133,538 + CA264_21350 0.36 -0.4
133,539 - CA264_21350 0.36 -0.3
133,585 - CA264_21350 0.41 -1.0
133,617 + CA264_21350 0.43 +0.5
133,618 - CA264_21350 0.44 -0.3
133,618 - CA264_21350 0.44 -0.5
133,618 - CA264_21350 0.44 -1.1
133,686 + CA264_21350 0.50 -1.6
133,686 + CA264_21350 0.50 -0.4
133,687 - CA264_21350 0.50 -1.4
133,687 - CA264_21350 0.50 -1.6
133,688 + CA264_21350 0.50 +0.1
133,689 - CA264_21350 0.50 -1.0
133,689 - CA264_21350 0.50 +0.1
133,708 + CA264_21350 0.52 -0.5
133,708 + CA264_21350 0.52 -0.6
133,729 - CA264_21350 0.54 -0.6
133,729 - CA264_21350 0.54 +1.2
133,729 - CA264_21350 0.54 -1.3
133,738 - CA264_21350 0.54 -1.4
133,738 - CA264_21350 0.54 -0.8
133,738 - CA264_21350 0.54 -1.5
133,739 + CA264_21350 0.54 +0.0
133,740 - CA264_21350 0.55 -0.2
133,740 - CA264_21350 0.55 -1.0
133,753 + CA264_21350 0.56 -0.2
133,766 + CA264_21350 0.57 +0.1
133,766 + CA264_21350 0.57 +0.9
133,904 + CA264_21350 0.69 -1.0
133,905 - CA264_21350 0.69 -1.3
133,926 + CA264_21350 0.71 +0.2
133,962 - CA264_21350 0.75 -1.2
134,044 - CA264_21350 0.82 -2.0
134,178 - -1.9
134,240 + -0.1
134,264 - -2.3
134,264 - -0.7
134,264 - -0.6
134,272 + -0.2
134,273 - -0.9
134,475 + CA264_21355 0.13 +0.1
134,476 - CA264_21355 0.13 -1.5
134,523 - CA264_21355 0.16 +0.1
134,526 + CA264_21355 0.16 -1.4
134,631 + CA264_21355 0.22 +0.6
134,632 - CA264_21355 0.23 -0.4
134,707 + CA264_21355 0.27 +0.6
134,784 - CA264_21355 0.32 -0.4
134,867 - CA264_21355 0.37 +1.1
134,905 + CA264_21355 0.40 +0.5
134,905 + CA264_21355 0.40 +1.3
134,906 - CA264_21355 0.40 -0.4
135,001 + CA264_21355 0.46 +0.4
135,083 + CA264_21355 0.51 -0.1
135,193 - CA264_21355 0.58 +1.7
135,268 - CA264_21355 0.63 +0.9
135,272 + CA264_21355 0.63 +1.1
135,273 - CA264_21355 0.63 -0.2
135,315 - CA264_21355 0.66 +0.9
135,381 - CA264_21355 0.70 -1.0
135,381 - CA264_21355 0.70 -0.6
135,537 - CA264_21355 0.80 +1.6
135,537 - CA264_21355 0.80 -2.9
135,838 + +0.2
135,838 + +0.9
135,839 - -1.2
135,839 - -0.3
135,847 + -0.0
135,847 + +0.4
135,850 + +1.0
135,866 - -1.0
135,921 + +0.2
135,922 - -1.2
135,942 - -0.5
135,948 + -0.3
135,948 + +0.0
135,948 + -0.3
135,948 + +0.1
135,949 - +0.7
135,949 - -1.4
135,949 - -0.1
135,949 - -1.1
135,949 - -0.8
135,954 - -1.5
135,954 - -0.4
135,954 - -0.6
135,954 - -1.4
135,996 - -0.5
136,023 - CA264_21360 0.12 +0.8
136,227 + CA264_21360 0.27 +0.9
136,253 + CA264_21360 0.29 -0.1
136,253 + CA264_21360 0.29 -0.5
136,254 - CA264_21360 0.29 -0.4
136,259 + CA264_21360 0.30 +0.1
136,310 + CA264_21360 0.34 +0.2
136,313 + CA264_21360 0.34 +0.5
136,314 - CA264_21360 0.34 -0.5
136,314 - CA264_21360 0.34 -0.0
136,407 - CA264_21360 0.41 -0.3
136,407 - CA264_21360 0.41 -0.1
136,469 + CA264_21360 0.46 +0.3
136,481 - CA264_21360 0.47 -0.1
136,558 + CA264_21360 0.53 +0.7
136,565 + CA264_21360 0.53 -0.4
136,566 - CA264_21360 0.53 -0.8
136,631 + CA264_21360 0.58 +0.3
136,679 + CA264_21360 0.62 -0.3
136,680 - CA264_21360 0.62 -0.4
136,680 - CA264_21360 0.62 -0.8
136,703 + CA264_21360 0.64 -0.0
136,704 - CA264_21360 0.64 -1.2
136,704 - CA264_21360 0.64 -0.5
136,704 - CA264_21360 0.64 -0.4
136,710 + CA264_21360 0.64 -0.1
136,711 - CA264_21360 0.64 -0.2
136,768 + CA264_21360 0.68 +1.3

Or see this region's nucleotide sequence