Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21320

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21310 and CA264_21315 are separated by 82 nucleotidesCA264_21315 and CA264_21320 are separated by 194 nucleotidesCA264_21320 and CA264_21325 are separated by 176 nucleotides CA264_21310: CA264_21310 - hypothetical protein, at 126,086 to 126,292 _21310 CA264_21315: CA264_21315 - four-helix bundle copper-binding protein, at 126,375 to 126,734 _21315 CA264_21320: CA264_21320 - hypothetical protein, at 126,929 to 127,609 _21320 CA264_21325: CA264_21325 - copper-translocating P-type ATPase, at 127,786 to 130,023 _21325 Position (kb) 126 127 128Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 126.021 kb on - strandat 126.044 kb on - strandat 126.218 kb on + strand, within CA264_21310at 126.219 kb on - strand, within CA264_21310at 126.339 kb on - strandat 126.374 kb on + strandat 126.375 kb on - strandat 126.455 kb on - strand, within CA264_21315at 126.534 kb on - strand, within CA264_21315at 126.535 kb on + strand, within CA264_21315at 126.535 kb on + strand, within CA264_21315at 126.536 kb on - strand, within CA264_21315at 126.615 kb on - strand, within CA264_21315at 126.615 kb on - strand, within CA264_21315at 126.615 kb on - strand, within CA264_21315at 126.647 kb on - strand, within CA264_21315at 126.733 kb on - strandat 126.834 kb on + strandat 126.834 kb on + strandat 126.835 kb on - strandat 126.874 kb on - strandat 126.899 kb on + strandat 126.946 kb on + strandat 127.075 kb on + strand, within CA264_21320at 127.080 kb on + strand, within CA264_21320at 127.094 kb on - strand, within CA264_21320at 127.197 kb on + strand, within CA264_21320at 127.198 kb on - strand, within CA264_21320at 127.205 kb on + strand, within CA264_21320at 127.206 kb on - strand, within CA264_21320at 127.206 kb on - strand, within CA264_21320at 127.293 kb on + strand, within CA264_21320at 127.376 kb on - strand, within CA264_21320at 127.376 kb on - strand, within CA264_21320at 127.376 kb on - strand, within CA264_21320at 127.420 kb on + strand, within CA264_21320at 127.421 kb on - strand, within CA264_21320at 127.446 kb on + strand, within CA264_21320at 127.542 kb on + strandat 127.632 kb on + strandat 127.633 kb on - strandat 127.633 kb on - strandat 127.633 kb on - strandat 127.655 kb on - strandat 127.741 kb on - strandat 127.741 kb on - strandat 127.770 kb on - strandat 127.770 kb on - strandat 127.780 kb on - strandat 127.976 kb on + strandat 127.998 kb on - strandat 128.175 kb on - strand, within CA264_21325at 128.223 kb on - strand, within CA264_21325at 128.223 kb on - strand, within CA264_21325at 128.227 kb on + strand, within CA264_21325at 128.227 kb on + strand, within CA264_21325at 128.227 kb on + strand, within CA264_21325at 128.311 kb on - strand, within CA264_21325at 128.362 kb on + strand, within CA264_21325at 128.362 kb on + strand, within CA264_21325at 128.363 kb on - strand, within CA264_21325at 128.363 kb on - strand, within CA264_21325at 128.411 kb on - strand, within CA264_21325at 128.411 kb on - strand, within CA264_21325at 128.463 kb on - strand, within CA264_21325at 128.504 kb on + strand, within CA264_21325at 128.505 kb on - strand, within CA264_21325at 128.505 kb on - strand, within CA264_21325at 128.532 kb on - strand, within CA264_21325at 128.601 kb on + strand, within CA264_21325

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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126,021 - -0.0
126,044 - -2.2
126,218 + CA264_21310 0.64 -0.8
126,219 - CA264_21310 0.64 -0.2
126,339 - -0.7
126,374 + -0.7
126,375 - -1.5
126,455 - CA264_21315 0.22 -1.3
126,534 - CA264_21315 0.44 -1.5
126,535 + CA264_21315 0.44 -0.5
126,535 + CA264_21315 0.44 +0.1
126,536 - CA264_21315 0.45 -1.2
126,615 - CA264_21315 0.67 -1.0
126,615 - CA264_21315 0.67 -1.0
126,615 - CA264_21315 0.67 -0.0
126,647 - CA264_21315 0.76 +1.5
126,733 - -0.1
126,834 + -0.8
126,834 + -0.6
126,835 - -0.5
126,874 - +0.2
126,899 + -1.4
126,946 + +0.1
127,075 + CA264_21320 0.21 +0.5
127,080 + CA264_21320 0.22 -0.4
127,094 - CA264_21320 0.24 -0.7
127,197 + CA264_21320 0.39 -1.3
127,198 - CA264_21320 0.40 -0.3
127,205 + CA264_21320 0.41 -0.4
127,206 - CA264_21320 0.41 -1.6
127,206 - CA264_21320 0.41 +0.9
127,293 + CA264_21320 0.53 +1.5
127,376 - CA264_21320 0.66 +0.1
127,376 - CA264_21320 0.66 -0.9
127,376 - CA264_21320 0.66 -1.2
127,420 + CA264_21320 0.72 -0.3
127,421 - CA264_21320 0.72 -0.7
127,446 + CA264_21320 0.76 -0.1
127,542 + -1.0
127,632 + +0.1
127,633 - -1.7
127,633 - -0.1
127,633 - +1.8
127,655 - -1.1
127,741 - -1.2
127,741 - -2.9
127,770 - -0.8
127,770 - -1.5
127,780 - -0.9
127,976 + +0.0
127,998 - -1.0
128,175 - CA264_21325 0.17 -1.1
128,223 - CA264_21325 0.20 -0.8
128,223 - CA264_21325 0.20 -0.6
128,227 + CA264_21325 0.20 -0.4
128,227 + CA264_21325 0.20 -0.2
128,227 + CA264_21325 0.20 -0.0
128,311 - CA264_21325 0.23 -0.7
128,362 + CA264_21325 0.26 +0.7
128,362 + CA264_21325 0.26 +1.1
128,363 - CA264_21325 0.26 +0.5
128,363 - CA264_21325 0.26 -0.7
128,411 - CA264_21325 0.28 +1.1
128,411 - CA264_21325 0.28 +0.1
128,463 - CA264_21325 0.30 -1.2
128,504 + CA264_21325 0.32 -0.3
128,505 - CA264_21325 0.32 -1.1
128,505 - CA264_21325 0.32 +0.3
128,532 - CA264_21325 0.33 -0.3
128,601 + CA264_21325 0.36 -0.5

Or see this region's nucleotide sequence