Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21175

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21170 and CA264_21175 are separated by 184 nucleotidesCA264_21175 and CA264_21180 are separated by 181 nucleotides CA264_21170: CA264_21170 - hypothetical protein, at 100,942 to 101,574 _21170 CA264_21175: CA264_21175 - STAS/SEC14 domain-containing protein, at 101,759 to 102,115 _21175 CA264_21180: CA264_21180 - ribulose-phosphate 3-epimerase, at 102,297 to 102,953 _21180 Position (kb) 101 102 103Strain fitness (log2 ratio) -2 -1 0 1 2 3at 100.764 kb on + strandat 100.767 kb on + strandat 100.768 kb on - strandat 100.830 kb on - strandat 100.838 kb on + strandat 100.839 kb on - strandat 100.894 kb on + strandat 100.894 kb on + strandat 100.895 kb on - strandat 100.895 kb on - strandat 100.895 kb on - strandat 100.895 kb on - strandat 100.924 kb on + strandat 100.933 kb on - strandat 100.933 kb on - strandat 100.933 kb on - strandat 100.941 kb on + strandat 100.957 kb on + strandat 100.986 kb on - strandat 100.995 kb on + strandat 101.019 kb on - strand, within CA264_21170at 101.067 kb on - strand, within CA264_21170at 101.074 kb on + strand, within CA264_21170at 101.075 kb on - strand, within CA264_21170at 101.075 kb on - strand, within CA264_21170at 101.078 kb on + strand, within CA264_21170at 101.127 kb on - strand, within CA264_21170at 101.260 kb on + strand, within CA264_21170at 101.261 kb on - strand, within CA264_21170at 101.275 kb on - strand, within CA264_21170at 101.321 kb on + strand, within CA264_21170at 101.379 kb on - strand, within CA264_21170at 101.417 kb on + strand, within CA264_21170at 101.418 kb on - strand, within CA264_21170at 101.418 kb on - strand, within CA264_21170at 101.475 kb on + strand, within CA264_21170at 101.475 kb on + strand, within CA264_21170at 101.476 kb on - strand, within CA264_21170at 101.506 kb on + strand, within CA264_21170at 101.507 kb on - strand, within CA264_21170at 101.507 kb on - strand, within CA264_21170at 101.507 kb on - strand, within CA264_21170at 101.507 kb on - strand, within CA264_21170at 101.509 kb on + strand, within CA264_21170at 101.509 kb on + strand, within CA264_21170at 101.510 kb on - strand, within CA264_21170at 101.510 kb on - strand, within CA264_21170at 101.514 kb on + strandat 101.515 kb on - strandat 101.515 kb on - strandat 101.565 kb on + strandat 101.565 kb on + strandat 101.575 kb on + strandat 101.592 kb on + strandat 101.592 kb on + strandat 101.592 kb on + strandat 101.592 kb on + strandat 101.593 kb on - strandat 101.593 kb on - strandat 101.593 kb on - strandat 101.593 kb on - strandat 101.593 kb on - strandat 101.615 kb on + strandat 101.668 kb on + strandat 101.668 kb on + strandat 101.669 kb on - strandat 101.669 kb on - strandat 101.669 kb on - strandat 101.669 kb on - strandat 101.672 kb on + strandat 101.713 kb on + strandat 101.713 kb on + strandat 101.714 kb on - strandat 101.714 kb on - strandat 101.844 kb on + strand, within CA264_21175at 101.865 kb on + strand, within CA264_21175at 101.866 kb on - strand, within CA264_21175at 101.866 kb on - strand, within CA264_21175at 101.869 kb on - strand, within CA264_21175at 101.894 kb on + strand, within CA264_21175at 101.895 kb on - strand, within CA264_21175at 102.047 kb on - strand, within CA264_21175at 102.065 kb on + strand, within CA264_21175at 102.154 kb on + strandat 102.154 kb on + strandat 102.155 kb on - strandat 102.173 kb on - strandat 102.175 kb on - strandat 102.180 kb on - strandat 102.408 kb on + strand, within CA264_21180at 102.409 kb on - strand, within CA264_21180at 102.467 kb on + strand, within CA264_21180at 102.467 kb on + strand, within CA264_21180at 102.467 kb on + strand, within CA264_21180at 102.541 kb on - strand, within CA264_21180at 102.541 kb on - strand, within CA264_21180at 102.580 kb on + strand, within CA264_21180at 102.636 kb on + strand, within CA264_21180at 102.646 kb on - strand, within CA264_21180at 102.654 kb on + strand, within CA264_21180at 102.705 kb on + strand, within CA264_21180at 102.706 kb on - strand, within CA264_21180at 102.706 kb on - strand, within CA264_21180at 102.780 kb on - strand, within CA264_21180at 102.838 kb on - strand, within CA264_21180at 102.855 kb on + strand, within CA264_21180at 102.856 kb on - strand, within CA264_21180at 102.856 kb on - strand, within CA264_21180at 102.875 kb on + strand, within CA264_21180at 102.876 kb on - strand, within CA264_21180at 102.876 kb on - strand, within CA264_21180at 102.931 kb on - strandat 102.931 kb on - strandat 102.956 kb on + strandat 103.061 kb on + strandat 103.062 kb on - strandat 103.098 kb on + strandat 103.098 kb on + strandat 103.099 kb on - strandat 103.105 kb on + strandat 103.114 kb on - strandat 103.114 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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100,764 + -0.2
100,767 + +0.4
100,768 - -0.8
100,830 - -1.5
100,838 + +0.7
100,839 - -1.2
100,894 + +0.8
100,894 + +0.4
100,895 - -0.3
100,895 - -0.6
100,895 - -1.1
100,895 - -1.1
100,924 + +0.7
100,933 - +0.7
100,933 - +1.3
100,933 - +2.3
100,941 + +0.9
100,957 + +1.2
100,986 - +0.8
100,995 + -0.1
101,019 - CA264_21170 0.12 +2.9
101,067 - CA264_21170 0.20 +1.0
101,074 + CA264_21170 0.21 -0.6
101,075 - CA264_21170 0.21 +0.4
101,075 - CA264_21170 0.21 +2.0
101,078 + CA264_21170 0.21 +0.4
101,127 - CA264_21170 0.29 +1.2
101,260 + CA264_21170 0.50 +0.6
101,261 - CA264_21170 0.50 +0.0
101,275 - CA264_21170 0.53 +1.9
101,321 + CA264_21170 0.60 -0.1
101,379 - CA264_21170 0.69 +0.3
101,417 + CA264_21170 0.75 -0.7
101,418 - CA264_21170 0.75 +0.4
101,418 - CA264_21170 0.75 +1.1
101,475 + CA264_21170 0.84 +0.5
101,475 + CA264_21170 0.84 -1.3
101,476 - CA264_21170 0.84 +0.2
101,506 + CA264_21170 0.89 +0.4
101,507 - CA264_21170 0.89 -1.2
101,507 - CA264_21170 0.89 -0.6
101,507 - CA264_21170 0.89 -0.5
101,507 - CA264_21170 0.89 -0.4
101,509 + CA264_21170 0.90 +1.0
101,509 + CA264_21170 0.90 -2.0
101,510 - CA264_21170 0.90 +0.5
101,510 - CA264_21170 0.90 -0.1
101,514 + +1.3
101,515 - +0.4
101,515 - -2.6
101,565 + +0.1
101,565 + +0.0
101,575 + +0.6
101,592 + -0.5
101,592 + +0.5
101,592 + +0.1
101,592 + +1.2
101,593 - +0.2
101,593 - -0.5
101,593 - +0.6
101,593 - +0.1
101,593 - +0.6
101,615 + +0.1
101,668 + +0.6
101,668 + +0.3
101,669 - +1.7
101,669 - -1.3
101,669 - +0.7
101,669 - -0.4
101,672 + -0.1
101,713 + +0.1
101,713 + +0.3
101,714 - -1.5
101,714 - -0.4
101,844 + CA264_21175 0.24 +0.2
101,865 + CA264_21175 0.30 +0.3
101,866 - CA264_21175 0.30 +0.0
101,866 - CA264_21175 0.30 +0.1
101,869 - CA264_21175 0.31 +0.1
101,894 + CA264_21175 0.38 -0.0
101,895 - CA264_21175 0.38 -1.8
102,047 - CA264_21175 0.81 -0.4
102,065 + CA264_21175 0.86 -0.3
102,154 + +0.0
102,154 + -1.1
102,155 - -1.0
102,173 - -0.1
102,175 - -1.4
102,180 - -0.3
102,408 + CA264_21180 0.17 +1.2
102,409 - CA264_21180 0.17 -0.3
102,467 + CA264_21180 0.26 +0.5
102,467 + CA264_21180 0.26 -0.7
102,467 + CA264_21180 0.26 -1.4
102,541 - CA264_21180 0.37 +0.4
102,541 - CA264_21180 0.37 -0.1
102,580 + CA264_21180 0.43 -1.0
102,636 + CA264_21180 0.52 +0.9
102,646 - CA264_21180 0.53 -1.7
102,654 + CA264_21180 0.54 +0.5
102,705 + CA264_21180 0.62 -0.7
102,706 - CA264_21180 0.62 +1.9
102,706 - CA264_21180 0.62 -0.6
102,780 - CA264_21180 0.74 -0.6
102,838 - CA264_21180 0.82 -0.6
102,855 + CA264_21180 0.85 -1.8
102,856 - CA264_21180 0.85 +0.4
102,856 - CA264_21180 0.85 -0.6
102,875 + CA264_21180 0.88 +0.8
102,876 - CA264_21180 0.88 -1.0
102,876 - CA264_21180 0.88 -2.0
102,931 - -0.1
102,931 - -0.8
102,956 + -1.0
103,061 + +0.4
103,062 - -1.1
103,098 + +0.0
103,098 + +1.6
103,099 - -0.3
103,105 + +0.3
103,114 - -1.1
103,114 - -0.6

Or see this region's nucleotide sequence