Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20915

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20915 and CA264_20920 are separated by 244 nucleotides CA264_20915: CA264_20915 - DNA repair protein, at 48,550 to 49,014 _20915 CA264_20920: CA264_20920 - hypothetical protein, at 49,259 to 50,200 _20920 Position (kb) 48 49 50Strain fitness (log2 ratio) -2 -1 0 1 2 3at 47.556 kb on + strandat 47.592 kb on - strandat 47.597 kb on + strandat 47.598 kb on - strandat 47.598 kb on - strandat 47.653 kb on + strandat 47.653 kb on + strandat 47.680 kb on + strandat 47.683 kb on - strandat 47.710 kb on + strandat 47.774 kb on + strandat 47.774 kb on + strandat 47.775 kb on - strandat 47.872 kb on + strandat 47.893 kb on + strandat 47.912 kb on + strandat 47.913 kb on - strandat 47.925 kb on + strandat 47.930 kb on - strandat 47.930 kb on - strandat 47.940 kb on + strandat 47.970 kb on + strandat 48.268 kb on + strandat 48.401 kb on + strandat 48.410 kb on - strandat 48.601 kb on + strand, within CA264_20915at 48.601 kb on + strand, within CA264_20915at 48.677 kb on + strand, within CA264_20915at 48.677 kb on + strand, within CA264_20915at 48.695 kb on + strand, within CA264_20915at 48.714 kb on + strand, within CA264_20915at 48.714 kb on + strand, within CA264_20915at 48.725 kb on + strand, within CA264_20915at 48.725 kb on + strand, within CA264_20915at 48.726 kb on - strand, within CA264_20915at 48.807 kb on + strand, within CA264_20915at 48.807 kb on + strand, within CA264_20915at 48.807 kb on + strand, within CA264_20915at 48.808 kb on - strand, within CA264_20915at 48.859 kb on - strand, within CA264_20915at 48.983 kb on - strandat 49.012 kb on + strandat 49.045 kb on - strandat 49.111 kb on + strandat 49.112 kb on - strandat 49.144 kb on - strandat 49.154 kb on - strandat 49.163 kb on - strandat 49.323 kb on + strandat 49.324 kb on - strandat 49.387 kb on - strand, within CA264_20920at 49.397 kb on + strand, within CA264_20920at 49.400 kb on + strand, within CA264_20920at 49.400 kb on + strand, within CA264_20920at 49.471 kb on + strand, within CA264_20920at 49.502 kb on + strand, within CA264_20920at 49.506 kb on + strand, within CA264_20920at 49.506 kb on + strand, within CA264_20920at 49.506 kb on + strand, within CA264_20920at 49.506 kb on + strand, within CA264_20920at 49.539 kb on - strand, within CA264_20920at 49.551 kb on - strand, within CA264_20920at 49.645 kb on + strand, within CA264_20920at 49.646 kb on - strand, within CA264_20920at 49.676 kb on - strand, within CA264_20920at 49.699 kb on + strand, within CA264_20920at 49.713 kb on + strand, within CA264_20920at 49.716 kb on + strand, within CA264_20920at 49.790 kb on + strand, within CA264_20920at 49.791 kb on - strand, within CA264_20920at 49.794 kb on - strand, within CA264_20920at 49.815 kb on + strand, within CA264_20920at 49.956 kb on + strand, within CA264_20920at 49.956 kb on + strand, within CA264_20920at 49.956 kb on + strand, within CA264_20920at 49.956 kb on - strand, within CA264_20920at 49.957 kb on - strand, within CA264_20920at 49.961 kb on + strand, within CA264_20920at 49.966 kb on + strand, within CA264_20920at 49.966 kb on + strand, within CA264_20920

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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47,556 + -0.4
47,592 - -0.2
47,597 + -1.1
47,598 - -0.6
47,598 - -0.2
47,653 + -1.3
47,653 + -1.2
47,680 + +0.2
47,683 - -0.6
47,710 + +0.1
47,774 + -0.0
47,774 + +0.3
47,775 - +0.1
47,872 + -0.2
47,893 + +0.7
47,912 + +0.1
47,913 - -0.1
47,925 + -1.8
47,930 - -0.3
47,930 - -0.3
47,940 + -1.1
47,970 + -0.4
48,268 + -2.3
48,401 + -1.0
48,410 - -0.1
48,601 + CA264_20915 0.11 +1.7
48,601 + CA264_20915 0.11 +0.6
48,677 + CA264_20915 0.27 +0.7
48,677 + CA264_20915 0.27 +1.0
48,695 + CA264_20915 0.31 -0.2
48,714 + CA264_20915 0.35 +0.4
48,714 + CA264_20915 0.35 +0.9
48,725 + CA264_20915 0.38 +0.8
48,725 + CA264_20915 0.38 +2.2
48,726 - CA264_20915 0.38 -1.2
48,807 + CA264_20915 0.55 -0.3
48,807 + CA264_20915 0.55 +0.7
48,807 + CA264_20915 0.55 +1.2
48,808 - CA264_20915 0.55 +0.2
48,859 - CA264_20915 0.66 +0.4
48,983 - -1.1
49,012 + -0.0
49,045 - -0.0
49,111 + +0.9
49,112 - -0.3
49,144 - +0.3
49,154 - +0.0
49,163 - -0.2
49,323 + +0.2
49,324 - -2.1
49,387 - CA264_20920 0.14 -1.1
49,397 + CA264_20920 0.15 +0.3
49,400 + CA264_20920 0.15 +1.1
49,400 + CA264_20920 0.15 +0.9
49,471 + CA264_20920 0.23 +0.0
49,502 + CA264_20920 0.26 +0.8
49,506 + CA264_20920 0.26 +0.6
49,506 + CA264_20920 0.26 +1.1
49,506 + CA264_20920 0.26 +2.9
49,506 + CA264_20920 0.26 +1.6
49,539 - CA264_20920 0.30 -0.5
49,551 - CA264_20920 0.31 -0.1
49,645 + CA264_20920 0.41 +0.9
49,646 - CA264_20920 0.41 +0.2
49,676 - CA264_20920 0.44 -1.4
49,699 + CA264_20920 0.47 +0.8
49,713 + CA264_20920 0.48 -0.1
49,716 + CA264_20920 0.49 +2.1
49,790 + CA264_20920 0.56 +0.2
49,791 - CA264_20920 0.56 -1.8
49,794 - CA264_20920 0.57 +0.3
49,815 + CA264_20920 0.59 -1.1
49,956 + CA264_20920 0.74 +1.1
49,956 + CA264_20920 0.74 +0.8
49,956 + CA264_20920 0.74 +1.0
49,956 - CA264_20920 0.74 -1.1
49,957 - CA264_20920 0.74 -0.5
49,961 + CA264_20920 0.75 +0.2
49,966 + CA264_20920 0.75 +0.9
49,966 + CA264_20920 0.75 +1.2

Or see this region's nucleotide sequence