Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19960

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19955 and CA264_19960 are separated by 69 nucleotidesCA264_19960 and CA264_19965 are separated by 62 nucleotides CA264_19955: CA264_19955 - SAM-dependent methyltransferase, at 4,600,235 to 4,601,074 _19955 CA264_19960: CA264_19960 - NUDIX hydrolase, at 4,601,144 to 4,601,623 _19960 CA264_19965: CA264_19965 - dipeptidyl aminopeptidase, at 4,601,686 to 4,602,768 _19965 Position (kb) 4601 4602Strain fitness (log2 ratio) -1 0 1at 4600.167 kb on + strandat 4600.168 kb on - strandat 4600.170 kb on - strandat 4600.269 kb on + strandat 4600.361 kb on + strand, within CA264_19955at 4600.379 kb on + strand, within CA264_19955at 4600.447 kb on - strand, within CA264_19955at 4600.588 kb on - strand, within CA264_19955at 4600.612 kb on + strand, within CA264_19955at 4600.613 kb on - strand, within CA264_19955at 4600.650 kb on - strand, within CA264_19955at 4600.744 kb on + strand, within CA264_19955at 4600.816 kb on - strand, within CA264_19955at 4600.848 kb on + strand, within CA264_19955at 4600.849 kb on - strand, within CA264_19955at 4600.922 kb on + strand, within CA264_19955at 4600.999 kb on - strandat 4601.070 kb on - strandat 4601.090 kb on + strandat 4601.091 kb on - strandat 4601.103 kb on + strandat 4601.134 kb on + strandat 4601.145 kb on + strandat 4601.237 kb on + strand, within CA264_19960at 4601.358 kb on + strand, within CA264_19960at 4601.359 kb on - strand, within CA264_19960at 4601.364 kb on + strand, within CA264_19960at 4601.365 kb on - strand, within CA264_19960at 4601.522 kb on + strand, within CA264_19960at 4601.539 kb on + strand, within CA264_19960at 4601.540 kb on - strand, within CA264_19960at 4601.574 kb on - strand, within CA264_19960at 4601.593 kb on + strandat 4601.663 kb on - strandat 4601.669 kb on + strandat 4601.669 kb on + strandat 4601.670 kb on - strandat 4601.670 kb on - strandat 4601.896 kb on + strand, within CA264_19965at 4601.904 kb on - strand, within CA264_19965at 4601.904 kb on - strand, within CA264_19965at 4601.996 kb on - strand, within CA264_19965at 4601.997 kb on + strand, within CA264_19965at 4602.042 kb on - strand, within CA264_19965at 4602.119 kb on - strand, within CA264_19965at 4602.119 kb on - strand, within CA264_19965at 4602.129 kb on + strand, within CA264_19965at 4602.130 kb on - strand, within CA264_19965at 4602.130 kb on - strand, within CA264_19965at 4602.132 kb on - strand, within CA264_19965at 4602.150 kb on - strand, within CA264_19965at 4602.279 kb on - strand, within CA264_19965at 4602.322 kb on + strand, within CA264_19965at 4602.419 kb on + strand, within CA264_19965at 4602.419 kb on + strand, within CA264_19965at 4602.545 kb on - strand, within CA264_19965at 4602.545 kb on - strand, within CA264_19965at 4602.568 kb on - strand, within CA264_19965at 4602.568 kb on - strand, within CA264_19965at 4602.574 kb on + strand, within CA264_19965at 4602.574 kb on + strand, within CA264_19965at 4602.584 kb on - strand, within CA264_19965

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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4,600,167 + -1.1
4,600,168 - +0.3
4,600,170 - +0.3
4,600,269 + -1.1
4,600,361 + CA264_19955 0.15 -0.4
4,600,379 + CA264_19955 0.17 -0.4
4,600,447 - CA264_19955 0.25 +0.9
4,600,588 - CA264_19955 0.42 -0.3
4,600,612 + CA264_19955 0.45 +0.3
4,600,613 - CA264_19955 0.45 +0.5
4,600,650 - CA264_19955 0.49 +1.2
4,600,744 + CA264_19955 0.61 +0.4
4,600,816 - CA264_19955 0.69 -0.3
4,600,848 + CA264_19955 0.73 -1.2
4,600,849 - CA264_19955 0.73 +0.2
4,600,922 + CA264_19955 0.82 +0.5
4,600,999 - +0.5
4,601,070 - -0.1
4,601,090 + -1.3
4,601,091 - +0.7
4,601,103 + -0.2
4,601,134 + -0.8
4,601,145 + -0.2
4,601,237 + CA264_19960 0.19 +0.1
4,601,358 + CA264_19960 0.45 -0.1
4,601,359 - CA264_19960 0.45 -0.2
4,601,364 + CA264_19960 0.46 -0.1
4,601,365 - CA264_19960 0.46 +0.8
4,601,522 + CA264_19960 0.79 -0.6
4,601,539 + CA264_19960 0.82 -0.6
4,601,540 - CA264_19960 0.82 +1.6
4,601,574 - CA264_19960 0.90 -0.1
4,601,593 + +0.4
4,601,663 - -0.1
4,601,669 + +0.3
4,601,669 + +0.2
4,601,670 - +0.4
4,601,670 - +0.7
4,601,896 + CA264_19965 0.19 -0.1
4,601,904 - CA264_19965 0.20 -0.8
4,601,904 - CA264_19965 0.20 -1.2
4,601,996 - CA264_19965 0.29 +0.9
4,601,997 + CA264_19965 0.29 -0.2
4,602,042 - CA264_19965 0.33 +0.4
4,602,119 - CA264_19965 0.40 +0.0
4,602,119 - CA264_19965 0.40 +0.1
4,602,129 + CA264_19965 0.41 -0.4
4,602,130 - CA264_19965 0.41 -0.8
4,602,130 - CA264_19965 0.41 -0.5
4,602,132 - CA264_19965 0.41 -0.2
4,602,150 - CA264_19965 0.43 -0.9
4,602,279 - CA264_19965 0.55 -0.9
4,602,322 + CA264_19965 0.59 -0.4
4,602,419 + CA264_19965 0.68 -0.6
4,602,419 + CA264_19965 0.68 -0.2
4,602,545 - CA264_19965 0.79 -0.9
4,602,545 - CA264_19965 0.79 -0.2
4,602,568 - CA264_19965 0.81 -0.5
4,602,568 - CA264_19965 0.81 -0.3
4,602,574 + CA264_19965 0.82 -1.1
4,602,574 + CA264_19965 0.82 -0.5
4,602,584 - CA264_19965 0.83 -0.5

Or see this region's nucleotide sequence