Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19655

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19650 and CA264_19655 are separated by 200 nucleotidesCA264_19655 and CA264_19660 are separated by 21 nucleotidesCA264_19660 and CA264_19665 are separated by 4 nucleotides CA264_19650: CA264_19650 - translation elongation factor Ts, at 4,538,490 to 4,539,323 _19650 CA264_19655: CA264_19655 - 30S ribosomal protein S2, at 4,539,524 to 4,540,291 _19655 CA264_19660: CA264_19660 - 30S ribosomal protein S9, at 4,540,313 to 4,540,699 _19660 CA264_19665: CA264_19665 - 50S ribosomal protein L13, at 4,540,704 to 4,541,153 _19665 Position (kb) 4539 4540 4541Strain fitness (log2 ratio) -1 0 1at 4539.349 kb on + strandat 4539.421 kb on + strandat 4539.422 kb on - strandat 4541.220 kb on - strandat 4541.231 kb on - strandat 4541.248 kb on + strandat 4541.248 kb on + strandat 4541.262 kb on + strandat 4541.282 kb on + strandat 4541.282 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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4,539,349 + +0.4
4,539,421 + -0.2
4,539,422 - +0.5
4,541,220 - +0.6
4,541,231 - +0.5
4,541,248 + -0.1
4,541,248 + -0.3
4,541,262 + +0.3
4,541,282 + +0.8
4,541,282 + +1.6

Or see this region's nucleotide sequence