Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19270

Experiment: m.b. A22 0.04 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_19250 and CA264_19255 are separated by 206 nucleotidesCA264_19255 and CA264_19260 are separated by 76 nucleotidesCA264_19260 and CA264_19265 are separated by 108 nucleotidesCA264_19265 and CA264_19270 are separated by 73 nucleotidesCA264_19270 and CA264_19275 are separated by 109 nucleotidesCA264_19275 and CA264_19280 are separated by 26 nucleotidesCA264_19280 and CA264_19285 are separated by 8 nucleotidesCA264_19285 and CA264_19290 are separated by 12 nucleotides CA264_19250: CA264_19250 - alanyl aminopeptidase, at 4,468,669 to 4,471,161 _19250 CA264_19255: CA264_19255 - tRNA-Tyr, at 4,471,368 to 4,471,453 _19255 CA264_19260: CA264_19260 - tRNA-Gly, at 4,471,530 to 4,471,602 _19260 CA264_19265: CA264_19265 - tRNA-Thr, at 4,471,711 to 4,471,782 _19265 CA264_19270: CA264_19270 - elongation factor Tu, at 4,471,856 to 4,473,043 _19270 CA264_19275: CA264_19275 - tRNA-Trp, at 4,473,153 to 4,473,228 _19275 CA264_19280: CA264_19280 - preprotein translocase subunit SecE, at 4,473,255 to 4,473,446 _19280 CA264_19285: CA264_19285 - transcription termination/antitermination factor NusG, at 4,473,455 to 4,474,015 _19285 CA264_19290: CA264_19290 - 50S ribosomal protein L11, at 4,474,028 to 4,474,471 _19290 Position (kb) 4471 4472 4473 4474Strain fitness (log2 ratio) -2 -1 0 1at 4470.907 kb on + strand, within CA264_19250at 4470.982 kb on + strandat 4470.986 kb on - strandat 4470.986 kb on - strandat 4471.088 kb on - strandat 4471.088 kb on - strandat 4471.090 kb on + strandat 4471.120 kb on - strandat 4471.120 kb on - strandat 4471.354 kb on + strandat 4471.607 kb on + strandat 4471.621 kb on + strandat 4471.681 kb on + strandat 4471.681 kb on + strandat 4471.681 kb on + strandat 4471.681 kb on + strandat 4471.689 kb on + strandat 4471.734 kb on + strand, within CA264_19265at 4471.793 kb on + strandat 4471.799 kb on + strandat 4471.818 kb on + strandat 4473.047 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
remove
4,470,907 + CA264_19250 0.90 -1.4
4,470,982 + -0.1
4,470,986 - -0.7
4,470,986 - -0.2
4,471,088 - -1.5
4,471,088 - -1.0
4,471,090 + -1.3
4,471,120 - -2.0
4,471,120 - -1.0
4,471,354 + -1.6
4,471,607 + +0.8
4,471,621 + -0.2
4,471,681 + +0.9
4,471,681 + +0.1
4,471,681 + -0.1
4,471,681 + +0.3
4,471,689 + +0.2
4,471,734 + CA264_19265 0.32 +1.5
4,471,793 + -0.1
4,471,799 + +0.1
4,471,818 + -0.1
4,473,047 + -0.3

Or see this region's nucleotide sequence