Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_19250 and CA264_19255 are separated by 206 nucleotides CA264_19255 and CA264_19260 are separated by 76 nucleotides CA264_19260 and CA264_19265 are separated by 108 nucleotides CA264_19265 and CA264_19270 are separated by 73 nucleotides CA264_19270 and CA264_19275 are separated by 109 nucleotides CA264_19275 and CA264_19280 are separated by 26 nucleotides CA264_19280 and CA264_19285 are separated by 8 nucleotides CA264_19285 and CA264_19290 are separated by 12 nucleotides
CA264_19250: CA264_19250 - alanyl aminopeptidase, at 4,468,669 to 4,471,161
_19250
CA264_19255: CA264_19255 - tRNA-Tyr, at 4,471,368 to 4,471,453
_19255
CA264_19260: CA264_19260 - tRNA-Gly, at 4,471,530 to 4,471,602
_19260
CA264_19265: CA264_19265 - tRNA-Thr, at 4,471,711 to 4,471,782
_19265
CA264_19270: CA264_19270 - elongation factor Tu, at 4,471,856 to 4,473,043
_19270
CA264_19275: CA264_19275 - tRNA-Trp, at 4,473,153 to 4,473,228
_19275
CA264_19280: CA264_19280 - preprotein translocase subunit SecE, at 4,473,255 to 4,473,446
_19280
CA264_19285: CA264_19285 - transcription termination/antitermination factor NusG, at 4,473,455 to 4,474,015
_19285
CA264_19290: CA264_19290 - 50S ribosomal protein L11, at 4,474,028 to 4,474,471
_19290
Position (kb)
4471
4472
4473
4474 Strain fitness (log2 ratio)
-2
-1
0
1 at 4470.907 kb on + strand, within CA264_19250 at 4470.982 kb on + strand at 4470.986 kb on - strand at 4470.986 kb on - strand at 4471.088 kb on - strand at 4471.088 kb on - strand at 4471.090 kb on + strand at 4471.120 kb on - strand at 4471.120 kb on - strand at 4471.354 kb on + strand at 4471.607 kb on + strand at 4471.621 kb on + strand at 4471.681 kb on + strand at 4471.681 kb on + strand at 4471.681 kb on + strand at 4471.681 kb on + strand at 4471.689 kb on + strand at 4471.734 kb on + strand, within CA264_19265 at 4471.793 kb on + strand at 4471.799 kb on + strand at 4471.818 kb on + strand at 4473.047 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 4,470,907 + CA264_19250 0.90 -1.4 4,470,982 + -0.1 4,470,986 - -0.7 4,470,986 - -0.2 4,471,088 - -1.5 4,471,088 - -1.0 4,471,090 + -1.3 4,471,120 - -2.0 4,471,120 - -1.0 4,471,354 + -1.6 4,471,607 + +0.8 4,471,621 + -0.2 4,471,681 + +0.9 4,471,681 + +0.1 4,471,681 + -0.1 4,471,681 + +0.3 4,471,689 + +0.2 4,471,734 + CA264_19265 0.32 +1.5 4,471,793 + -0.1 4,471,799 + +0.1 4,471,818 + -0.1 4,473,047 + -0.3
Or see this region's nucleotide sequence