Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18545

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18540 and CA264_18545 are separated by 203 nucleotidesCA264_18545 and CA264_18550 are separated by 321 nucleotidesCA264_18550 and CA264_18555 are separated by 81 nucleotidesCA264_18555 and CA264_18560 are separated by 202 nucleotides CA264_18540: CA264_18540 - RNA methyltransferase, at 4,313,909 to 4,314,448 _18540 CA264_18545: CA264_18545 - DNA mismatch repair protein MutS, at 4,314,652 to 4,317,285 _18545 CA264_18550: CA264_18550 - tRNA-Gly, at 4,317,607 to 4,317,679 _18550 CA264_18555: CA264_18555 - tRNA-Leu, at 4,317,761 to 4,317,844 _18555 CA264_18560: CA264_18560 - hypothetical protein, at 4,318,047 to 4,319,141 _18560 Position (kb) 4314 4315 4316 4317 4318Strain fitness (log2 ratio) -2 -1 0 1 2at 4313.720 kb on + strandat 4313.737 kb on - strandat 4313.737 kb on - strandat 4313.737 kb on - strandat 4313.741 kb on - strandat 4313.741 kb on - strandat 4313.741 kb on - strandat 4313.741 kb on - strandat 4313.742 kb on + strandat 4313.743 kb on - strandat 4313.743 kb on - strandat 4313.769 kb on - strandat 4313.974 kb on + strand, within CA264_18540at 4314.082 kb on - strand, within CA264_18540at 4314.121 kb on + strand, within CA264_18540at 4314.122 kb on - strand, within CA264_18540at 4314.122 kb on - strand, within CA264_18540at 4314.251 kb on - strand, within CA264_18540at 4314.432 kb on - strandat 4314.474 kb on - strandat 4314.474 kb on - strandat 4314.550 kb on - strandat 4314.568 kb on + strandat 4314.570 kb on + strandat 4314.571 kb on - strandat 4314.602 kb on + strandat 4314.603 kb on - strandat 4314.639 kb on + strandat 4314.639 kb on + strandat 4314.640 kb on - strandat 4314.640 kb on - strandat 4314.643 kb on - strandat 4314.643 kb on - strandat 4314.648 kb on + strandat 4314.648 kb on + strandat 4314.648 kb on + strandat 4314.648 kb on + strandat 4314.648 kb on + strandat 4314.648 kb on + strandat 4314.648 kb on + strandat 4314.648 kb on + strandat 4314.649 kb on - strandat 4314.649 kb on - strandat 4314.651 kb on + strandat 4314.652 kb on - strandat 4314.652 kb on - strandat 4314.697 kb on + strandat 4314.810 kb on - strandat 4314.810 kb on - strandat 4314.812 kb on + strandat 4314.883 kb on + strandat 4314.884 kb on - strandat 4314.884 kb on - strandat 4314.977 kb on + strand, within CA264_18545at 4315.042 kb on + strand, within CA264_18545at 4315.043 kb on - strand, within CA264_18545at 4315.240 kb on + strand, within CA264_18545at 4315.241 kb on - strand, within CA264_18545at 4315.241 kb on - strand, within CA264_18545at 4315.263 kb on + strand, within CA264_18545at 4315.369 kb on - strand, within CA264_18545at 4315.369 kb on - strand, within CA264_18545at 4315.443 kb on + strand, within CA264_18545at 4315.443 kb on + strand, within CA264_18545at 4315.443 kb on + strand, within CA264_18545at 4315.444 kb on - strand, within CA264_18545at 4315.447 kb on + strand, within CA264_18545at 4315.447 kb on + strand, within CA264_18545at 4315.448 kb on - strand, within CA264_18545at 4315.674 kb on - strand, within CA264_18545at 4316.007 kb on - strand, within CA264_18545at 4316.088 kb on - strand, within CA264_18545at 4316.158 kb on + strand, within CA264_18545at 4316.158 kb on + strand, within CA264_18545at 4316.159 kb on - strand, within CA264_18545at 4316.183 kb on - strand, within CA264_18545at 4316.218 kb on + strand, within CA264_18545at 4316.219 kb on - strand, within CA264_18545at 4316.241 kb on + strand, within CA264_18545at 4316.257 kb on + strand, within CA264_18545at 4316.258 kb on - strand, within CA264_18545at 4316.270 kb on - strand, within CA264_18545at 4316.270 kb on - strand, within CA264_18545at 4316.270 kb on - strand, within CA264_18545at 4316.418 kb on - strand, within CA264_18545at 4316.420 kb on + strand, within CA264_18545at 4316.420 kb on + strand, within CA264_18545at 4316.421 kb on - strand, within CA264_18545at 4316.449 kb on + strand, within CA264_18545at 4316.449 kb on + strand, within CA264_18545at 4316.450 kb on - strand, within CA264_18545at 4316.464 kb on - strand, within CA264_18545at 4316.492 kb on + strand, within CA264_18545at 4316.524 kb on - strand, within CA264_18545at 4316.620 kb on - strand, within CA264_18545at 4316.636 kb on + strand, within CA264_18545at 4316.670 kb on + strand, within CA264_18545at 4316.671 kb on - strand, within CA264_18545at 4316.671 kb on - strand, within CA264_18545at 4316.671 kb on - strand, within CA264_18545at 4316.677 kb on - strand, within CA264_18545at 4316.718 kb on - strand, within CA264_18545at 4316.770 kb on + strand, within CA264_18545at 4316.827 kb on + strand, within CA264_18545at 4316.828 kb on - strand, within CA264_18545at 4316.828 kb on - strand, within CA264_18545at 4316.857 kb on + strand, within CA264_18545at 4316.858 kb on - strand, within CA264_18545at 4316.905 kb on + strand, within CA264_18545at 4316.905 kb on + strand, within CA264_18545at 4316.905 kb on + strand, within CA264_18545at 4316.906 kb on - strand, within CA264_18545at 4316.906 kb on - strand, within CA264_18545at 4316.991 kb on - strand, within CA264_18545at 4316.991 kb on - strand, within CA264_18545at 4316.991 kb on - strand, within CA264_18545at 4316.991 kb on - strand, within CA264_18545at 4317.415 kb on - strandat 4317.415 kb on - strandat 4317.872 kb on + strandat 4317.984 kb on - strandat 4318.117 kb on + strandat 4318.118 kb on - strandat 4318.123 kb on + strandat 4318.124 kb on - strandat 4318.126 kb on - strandat 4318.130 kb on - strandat 4318.137 kb on + strandat 4318.138 kb on - strandat 4318.141 kb on - strandat 4318.168 kb on + strand, within CA264_18560at 4318.217 kb on + strand, within CA264_18560at 4318.217 kb on + strand, within CA264_18560at 4318.218 kb on - strand, within CA264_18560at 4318.218 kb on - strand, within CA264_18560

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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4,313,720 + -0.7
4,313,737 - -0.4
4,313,737 - -0.9
4,313,737 - -0.6
4,313,741 - -0.8
4,313,741 - -0.8
4,313,741 - -1.0
4,313,741 - +1.1
4,313,742 + -0.6
4,313,743 - -0.9
4,313,743 - -0.8
4,313,769 - -0.4
4,313,974 + CA264_18540 0.12 +0.5
4,314,082 - CA264_18540 0.32 +0.4
4,314,121 + CA264_18540 0.39 +0.6
4,314,122 - CA264_18540 0.39 -0.1
4,314,122 - CA264_18540 0.39 +0.4
4,314,251 - CA264_18540 0.63 +1.2
4,314,432 - +0.5
4,314,474 - -0.2
4,314,474 - +0.0
4,314,550 - +0.5
4,314,568 + +1.3
4,314,570 + -1.1
4,314,571 - +0.3
4,314,602 + -0.2
4,314,603 - +0.2
4,314,639 + -0.4
4,314,639 + -0.1
4,314,640 - -0.3
4,314,640 - +0.7
4,314,643 - +0.7
4,314,643 - -0.2
4,314,648 + -0.9
4,314,648 + +0.6
4,314,648 + +0.5
4,314,648 + -0.0
4,314,648 + -0.1
4,314,648 + +0.5
4,314,648 + +0.3
4,314,648 + -1.4
4,314,649 - +0.6
4,314,649 - +0.7
4,314,651 + +0.3
4,314,652 - -0.0
4,314,652 - +0.1
4,314,697 + +0.2
4,314,810 - -0.1
4,314,810 - -0.8
4,314,812 + +0.5
4,314,883 + +1.0
4,314,884 - +0.1
4,314,884 - -0.2
4,314,977 + CA264_18545 0.12 +0.9
4,315,042 + CA264_18545 0.15 -0.0
4,315,043 - CA264_18545 0.15 -0.2
4,315,240 + CA264_18545 0.22 +0.0
4,315,241 - CA264_18545 0.22 -1.1
4,315,241 - CA264_18545 0.22 -0.2
4,315,263 + CA264_18545 0.23 +0.3
4,315,369 - CA264_18545 0.27 +0.3
4,315,369 - CA264_18545 0.27 +0.2
4,315,443 + CA264_18545 0.30 +1.5
4,315,443 + CA264_18545 0.30 -1.3
4,315,443 + CA264_18545 0.30 -0.2
4,315,444 - CA264_18545 0.30 -1.1
4,315,447 + CA264_18545 0.30 -0.0
4,315,447 + CA264_18545 0.30 -0.8
4,315,448 - CA264_18545 0.30 -1.4
4,315,674 - CA264_18545 0.39 +0.4
4,316,007 - CA264_18545 0.51 +0.2
4,316,088 - CA264_18545 0.55 +0.9
4,316,158 + CA264_18545 0.57 -0.4
4,316,158 + CA264_18545 0.57 -0.1
4,316,159 - CA264_18545 0.57 -0.5
4,316,183 - CA264_18545 0.58 -0.0
4,316,218 + CA264_18545 0.59 -0.1
4,316,219 - CA264_18545 0.59 -0.1
4,316,241 + CA264_18545 0.60 -0.3
4,316,257 + CA264_18545 0.61 +0.0
4,316,258 - CA264_18545 0.61 +2.5
4,316,270 - CA264_18545 0.61 +0.2
4,316,270 - CA264_18545 0.61 -1.6
4,316,270 - CA264_18545 0.61 +1.3
4,316,418 - CA264_18545 0.67 -0.4
4,316,420 + CA264_18545 0.67 -0.2
4,316,420 + CA264_18545 0.67 -0.1
4,316,421 - CA264_18545 0.67 -0.6
4,316,449 + CA264_18545 0.68 -0.3
4,316,449 + CA264_18545 0.68 -0.6
4,316,450 - CA264_18545 0.68 -0.5
4,316,464 - CA264_18545 0.69 -0.4
4,316,492 + CA264_18545 0.70 -0.9
4,316,524 - CA264_18545 0.71 -0.6
4,316,620 - CA264_18545 0.75 -0.4
4,316,636 + CA264_18545 0.75 -0.0
4,316,670 + CA264_18545 0.77 -0.4
4,316,671 - CA264_18545 0.77 -0.5
4,316,671 - CA264_18545 0.77 -0.9
4,316,671 - CA264_18545 0.77 -0.4
4,316,677 - CA264_18545 0.77 -1.1
4,316,718 - CA264_18545 0.78 -1.9
4,316,770 + CA264_18545 0.80 +0.8
4,316,827 + CA264_18545 0.83 -0.4
4,316,828 - CA264_18545 0.83 -0.1
4,316,828 - CA264_18545 0.83 -0.2
4,316,857 + CA264_18545 0.84 +0.2
4,316,858 - CA264_18545 0.84 -0.5
4,316,905 + CA264_18545 0.86 +0.6
4,316,905 + CA264_18545 0.86 -0.3
4,316,905 + CA264_18545 0.86 +0.7
4,316,906 - CA264_18545 0.86 -0.8
4,316,906 - CA264_18545 0.86 -0.4
4,316,991 - CA264_18545 0.89 -0.3
4,316,991 - CA264_18545 0.89 -0.9
4,316,991 - CA264_18545 0.89 +0.4
4,316,991 - CA264_18545 0.89 -1.7
4,317,415 - -0.2
4,317,415 - -0.2
4,317,872 + +1.2
4,317,984 - +0.3
4,318,117 + -0.3
4,318,118 - -1.6
4,318,123 + -0.1
4,318,124 - -0.1
4,318,126 - -0.1
4,318,130 - -0.8
4,318,137 + +0.9
4,318,138 - -0.7
4,318,141 - +0.2
4,318,168 + CA264_18560 0.11 +0.1
4,318,217 + CA264_18560 0.16 -0.9
4,318,217 + CA264_18560 0.16 -0.6
4,318,218 - CA264_18560 0.16 -1.5
4,318,218 - CA264_18560 0.16 -0.7

Or see this region's nucleotide sequence