Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_18210 and CA264_18215 are separated by 321 nucleotides CA264_18215 and CA264_18220 are separated by 178 nucleotides CA264_18220 and CA264_18225 are separated by 229 nucleotides
CA264_18210: CA264_18210 - L-serine dehydratase, iron-sulfur-dependent subunit alpha, at 4,236,460 to 4,237,371
_18210
CA264_18215: CA264_18215 - hypothetical protein, at 4,237,693 to 4,238,127
_18215
CA264_18220: CA264_18220 - acylphosphatase, at 4,238,306 to 4,238,590
_18220
CA264_18225: CA264_18225 - hypothetical protein, at 4,238,820 to 4,239,374
_18225
Position (kb)
4237
4238
4239 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4236.706 kb on + strand, within CA264_18210 at 4236.725 kb on - strand, within CA264_18210 at 4236.725 kb on - strand, within CA264_18210 at 4236.725 kb on - strand, within CA264_18210 at 4236.935 kb on - strand, within CA264_18210 at 4236.952 kb on + strand, within CA264_18210 at 4237.134 kb on + strand, within CA264_18210 at 4237.239 kb on + strand, within CA264_18210 at 4237.371 kb on + strand at 4237.371 kb on + strand at 4237.372 kb on - strand at 4237.372 kb on - strand at 4237.428 kb on - strand at 4237.478 kb on + strand at 4237.557 kb on + strand at 4237.591 kb on - strand at 4237.614 kb on - strand at 4237.625 kb on + strand at 4237.625 kb on + strand at 4237.625 kb on + strand at 4237.666 kb on - strand at 4237.668 kb on + strand at 4237.669 kb on - strand at 4237.678 kb on + strand at 4237.679 kb on - strand at 4237.836 kb on + strand, within CA264_18215 at 4237.885 kb on + strand, within CA264_18215 at 4237.886 kb on - strand, within CA264_18215 at 4237.886 kb on - strand, within CA264_18215 at 4237.933 kb on + strand, within CA264_18215 at 4237.942 kb on + strand, within CA264_18215 at 4238.111 kb on - strand at 4238.183 kb on - strand at 4238.188 kb on - strand at 4238.208 kb on + strand at 4238.209 kb on - strand at 4238.302 kb on + strand at 4238.400 kb on + strand, within CA264_18220 at 4238.445 kb on - strand, within CA264_18220 at 4238.445 kb on - strand, within CA264_18220 at 4238.446 kb on + strand, within CA264_18220 at 4238.641 kb on + strand at 4238.642 kb on - strand at 4238.642 kb on - strand at 4238.643 kb on + strand at 4238.644 kb on - strand at 4238.649 kb on - strand at 4238.649 kb on - strand at 4238.649 kb on - strand at 4238.653 kb on + strand at 4238.704 kb on - strand at 4238.704 kb on - strand at 4238.743 kb on - strand at 4238.796 kb on + strand at 4238.797 kb on - strand at 4238.958 kb on + strand, within CA264_18225 at 4238.988 kb on + strand, within CA264_18225 at 4238.989 kb on - strand, within CA264_18225 at 4238.992 kb on - strand, within CA264_18225 at 4239.035 kb on + strand, within CA264_18225 at 4239.035 kb on + strand, within CA264_18225 at 4239.087 kb on + strand, within CA264_18225 at 4239.087 kb on + strand, within CA264_18225 at 4239.090 kb on + strand, within CA264_18225 at 4239.090 kb on + strand, within CA264_18225 at 4239.092 kb on + strand, within CA264_18225 at 4239.093 kb on - strand, within CA264_18225 at 4239.094 kb on + strand, within CA264_18225 at 4239.094 kb on + strand, within CA264_18225 at 4239.095 kb on - strand, within CA264_18225 at 4239.095 kb on - strand, within CA264_18225
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 4,236,706 + CA264_18210 0.27 -0.8 4,236,725 - CA264_18210 0.29 -1.4 4,236,725 - CA264_18210 0.29 -0.7 4,236,725 - CA264_18210 0.29 -0.5 4,236,935 - CA264_18210 0.52 +0.9 4,236,952 + CA264_18210 0.54 -1.0 4,237,134 + CA264_18210 0.74 -1.7 4,237,239 + CA264_18210 0.85 -0.8 4,237,371 + -0.0 4,237,371 + -0.1 4,237,372 - +0.7 4,237,372 - +0.3 4,237,428 - +1.4 4,237,478 + +0.2 4,237,557 + +0.4 4,237,591 - +0.7 4,237,614 - +0.4 4,237,625 + -0.1 4,237,625 + +1.0 4,237,625 + +0.4 4,237,666 - +0.5 4,237,668 + +0.6 4,237,669 - +0.9 4,237,678 + +1.5 4,237,679 - +0.5 4,237,836 + CA264_18215 0.33 +0.6 4,237,885 + CA264_18215 0.44 +0.4 4,237,886 - CA264_18215 0.44 +1.3 4,237,886 - CA264_18215 0.44 +0.7 4,237,933 + CA264_18215 0.55 -0.3 4,237,942 + CA264_18215 0.57 +0.1 4,238,111 - +0.4 4,238,183 - +0.7 4,238,188 - +1.8 4,238,208 + -0.2 4,238,209 - +0.1 4,238,302 + +0.1 4,238,400 + CA264_18220 0.33 -0.7 4,238,445 - CA264_18220 0.49 +0.2 4,238,445 - CA264_18220 0.49 +0.3 4,238,446 + CA264_18220 0.49 +0.2 4,238,641 + -0.9 4,238,642 - -2.2 4,238,642 - -2.3 4,238,643 + -1.1 4,238,644 - -1.5 4,238,649 - -2.2 4,238,649 - -2.7 4,238,649 - +0.4 4,238,653 + -1.0 4,238,704 - -1.6 4,238,704 - -1.4 4,238,743 - -0.3 4,238,796 + -0.7 4,238,797 - -0.2 4,238,958 + CA264_18225 0.25 -0.4 4,238,988 + CA264_18225 0.30 +0.2 4,238,989 - CA264_18225 0.30 -0.8 4,238,992 - CA264_18225 0.31 -1.7 4,239,035 + CA264_18225 0.39 -0.9 4,239,035 + CA264_18225 0.39 -0.9 4,239,087 + CA264_18225 0.48 -0.7 4,239,087 + CA264_18225 0.48 -1.2 4,239,090 + CA264_18225 0.49 -1.2 4,239,090 + CA264_18225 0.49 -1.7 4,239,092 + CA264_18225 0.49 -1.5 4,239,093 - CA264_18225 0.49 -1.2 4,239,094 + CA264_18225 0.49 -1.3 4,239,094 + CA264_18225 0.49 -0.8 4,239,095 - CA264_18225 0.50 -0.2 4,239,095 - CA264_18225 0.50 -0.4
Or see this region's nucleotide sequence