Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_16735 and CA264_16740 are separated by 392 nucleotides CA264_16740 and CA264_16745 overlap by 19 nucleotides
CA264_16735: CA264_16735 - hypothetical protein, at 3,898,291 to 3,901,929
_16735
CA264_16740: CA264_16740 - hypothetical protein, at 3,902,322 to 3,903,116
_16740
CA264_16745: CA264_16745 - TonB dependent receptor, at 3,903,098 to 3,905,329
_16745
Position (kb)
3902
3903
3904 Strain fitness (log2 ratio)
-2
-1
0
1 at 3901.357 kb on + strand, within CA264_16735 at 3901.377 kb on + strand, within CA264_16735 at 3901.378 kb on - strand, within CA264_16735 at 3901.413 kb on + strand, within CA264_16735 at 3901.416 kb on - strand, within CA264_16735 at 3901.466 kb on + strand, within CA264_16735 at 3901.467 kb on - strand, within CA264_16735 at 3901.643 kb on + strand at 3901.644 kb on - strand at 3901.644 kb on - strand at 3901.644 kb on - strand at 3901.644 kb on - strand at 3901.646 kb on + strand at 3901.646 kb on + strand at 3901.647 kb on - strand at 3901.650 kb on + strand at 3901.650 kb on + strand at 3901.651 kb on - strand at 3901.651 kb on - strand at 3901.659 kb on + strand at 3901.663 kb on + strand at 3901.664 kb on - strand at 3901.664 kb on - strand at 3901.668 kb on + strand at 3901.753 kb on - strand at 3901.755 kb on - strand at 3901.821 kb on + strand at 3901.822 kb on - strand at 3901.873 kb on + strand at 3901.873 kb on + strand at 3901.880 kb on + strand at 3901.915 kb on + strand at 3901.915 kb on + strand at 3901.915 kb on + strand at 3901.952 kb on + strand at 3901.953 kb on - strand at 3901.953 kb on - strand at 3901.955 kb on - strand at 3901.985 kb on - strand at 3901.986 kb on + strand at 3901.987 kb on - strand at 3901.988 kb on + strand at 3901.989 kb on - strand at 3901.997 kb on - strand at 3902.005 kb on + strand at 3902.006 kb on - strand at 3902.082 kb on - strand at 3902.108 kb on + strand at 3902.108 kb on + strand at 3902.176 kb on + strand at 3902.176 kb on + strand at 3902.279 kb on + strand at 3902.280 kb on - strand at 3902.332 kb on + strand at 3902.351 kb on + strand at 3902.354 kb on - strand at 3902.460 kb on - strand, within CA264_16740 at 3902.461 kb on + strand, within CA264_16740 at 3902.462 kb on - strand, within CA264_16740 at 3902.462 kb on - strand, within CA264_16740 at 3902.566 kb on + strand, within CA264_16740 at 3902.566 kb on + strand, within CA264_16740 at 3902.566 kb on + strand, within CA264_16740 at 3902.580 kb on - strand, within CA264_16740 at 3902.586 kb on + strand, within CA264_16740 at 3902.586 kb on + strand, within CA264_16740 at 3902.587 kb on - strand, within CA264_16740 at 3902.605 kb on + strand, within CA264_16740 at 3902.614 kb on + strand, within CA264_16740 at 3902.624 kb on - strand, within CA264_16740 at 3902.626 kb on + strand, within CA264_16740 at 3902.661 kb on - strand, within CA264_16740 at 3902.697 kb on + strand, within CA264_16740 at 3902.697 kb on + strand, within CA264_16740 at 3902.697 kb on + strand, within CA264_16740 at 3902.697 kb on + strand, within CA264_16740 at 3902.698 kb on - strand, within CA264_16740 at 3902.698 kb on - strand, within CA264_16740 at 3902.698 kb on - strand, within CA264_16740 at 3902.715 kb on + strand, within CA264_16740 at 3902.716 kb on - strand, within CA264_16740 at 3902.732 kb on - strand, within CA264_16740 at 3902.806 kb on + strand, within CA264_16740 at 3902.807 kb on - strand, within CA264_16740 at 3902.810 kb on + strand, within CA264_16740 at 3902.810 kb on + strand, within CA264_16740 at 3902.811 kb on - strand, within CA264_16740 at 3902.811 kb on - strand, within CA264_16740 at 3902.818 kb on + strand, within CA264_16740 at 3902.819 kb on - strand, within CA264_16740 at 3902.819 kb on - strand, within CA264_16740 at 3902.844 kb on - strand, within CA264_16740 at 3902.844 kb on - strand, within CA264_16740 at 3902.993 kb on - strand, within CA264_16740 at 3903.033 kb on + strand, within CA264_16740 at 3903.080 kb on + strand at 3903.081 kb on - strand at 3903.094 kb on + strand at 3903.095 kb on - strand at 3903.095 kb on - strand at 3903.100 kb on - strand at 3903.136 kb on + strand at 3903.173 kb on - strand at 3903.234 kb on + strand at 3903.235 kb on - strand at 3903.236 kb on + strand at 3903.237 kb on - strand at 3903.251 kb on + strand at 3903.252 kb on - strand at 3903.302 kb on + strand at 3903.410 kb on + strand, within CA264_16745 at 3903.410 kb on + strand, within CA264_16745 at 3903.422 kb on - strand, within CA264_16745 at 3903.422 kb on - strand, within CA264_16745 at 3903.424 kb on - strand, within CA264_16745 at 3903.424 kb on - strand, within CA264_16745 at 3903.483 kb on + strand, within CA264_16745 at 3903.577 kb on - strand, within CA264_16745 at 3903.587 kb on - strand, within CA264_16745 at 3903.588 kb on + strand, within CA264_16745 at 3903.638 kb on + strand, within CA264_16745 at 3903.638 kb on + strand, within CA264_16745 at 3903.640 kb on + strand, within CA264_16745 at 3903.641 kb on - strand, within CA264_16745 at 3903.645 kb on + strand, within CA264_16745 at 3903.646 kb on - strand, within CA264_16745 at 3903.658 kb on + strand, within CA264_16745 at 3903.715 kb on - strand, within CA264_16745 at 3903.778 kb on + strand, within CA264_16745 at 3903.895 kb on - strand, within CA264_16745 at 3903.909 kb on + strand, within CA264_16745 at 3903.909 kb on + strand, within CA264_16745 at 3903.967 kb on - strand, within CA264_16745 at 3903.986 kb on - strand, within CA264_16745 at 3904.008 kb on + strand, within CA264_16745 at 3904.009 kb on - strand, within CA264_16745 at 3904.012 kb on + strand, within CA264_16745 at 3904.028 kb on - strand, within CA264_16745
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 3,901,357 + CA264_16735 0.84 -0.0 3,901,377 + CA264_16735 0.85 +1.1 3,901,378 - CA264_16735 0.85 -0.2 3,901,413 + CA264_16735 0.86 +0.5 3,901,416 - CA264_16735 0.86 -0.5 3,901,466 + CA264_16735 0.87 -1.4 3,901,467 - CA264_16735 0.87 -0.3 3,901,643 + -0.2 3,901,644 - -1.0 3,901,644 - -0.6 3,901,644 - +0.6 3,901,644 - -0.3 3,901,646 + -1.4 3,901,646 + +0.1 3,901,647 - +0.6 3,901,650 + -0.1 3,901,650 + +0.8 3,901,651 - +0.3 3,901,651 - -0.1 3,901,659 + +0.2 3,901,663 + +0.0 3,901,664 - -1.0 3,901,664 - +0.4 3,901,668 + -0.3 3,901,753 - +0.3 3,901,755 - -0.6 3,901,821 + -2.2 3,901,822 - -0.3 3,901,873 + -0.3 3,901,873 + +0.8 3,901,880 + +0.4 3,901,915 + -0.9 3,901,915 + -0.8 3,901,915 + -0.2 3,901,952 + -0.2 3,901,953 - -1.2 3,901,953 - -0.5 3,901,955 - -1.0 3,901,985 - -1.0 3,901,986 + -0.4 3,901,987 - -1.6 3,901,988 + +0.4 3,901,989 - -0.5 3,901,997 - -1.0 3,902,005 + -1.0 3,902,006 - -0.1 3,902,082 - -1.1 3,902,108 + +0.0 3,902,108 + -0.3 3,902,176 + +1.1 3,902,176 + +0.1 3,902,279 + -1.2 3,902,280 - -0.6 3,902,332 + -0.7 3,902,351 + -0.1 3,902,354 - +0.5 3,902,460 - CA264_16740 0.17 +0.7 3,902,461 + CA264_16740 0.17 -1.4 3,902,462 - CA264_16740 0.18 -0.4 3,902,462 - CA264_16740 0.18 +0.7 3,902,566 + CA264_16740 0.31 -0.5 3,902,566 + CA264_16740 0.31 -0.6 3,902,566 + CA264_16740 0.31 +0.3 3,902,580 - CA264_16740 0.32 +0.5 3,902,586 + CA264_16740 0.33 -0.2 3,902,586 + CA264_16740 0.33 -0.2 3,902,587 - CA264_16740 0.33 +0.6 3,902,605 + CA264_16740 0.36 -0.1 3,902,614 + CA264_16740 0.37 +1.2 3,902,624 - CA264_16740 0.38 -0.9 3,902,626 + CA264_16740 0.38 -0.3 3,902,661 - CA264_16740 0.43 +0.5 3,902,697 + CA264_16740 0.47 +0.6 3,902,697 + CA264_16740 0.47 +0.6 3,902,697 + CA264_16740 0.47 -0.3 3,902,697 + CA264_16740 0.47 +0.4 3,902,698 - CA264_16740 0.47 +1.0 3,902,698 - CA264_16740 0.47 +0.7 3,902,698 - CA264_16740 0.47 -0.4 3,902,715 + CA264_16740 0.49 -0.5 3,902,716 - CA264_16740 0.50 +1.4 3,902,732 - CA264_16740 0.52 +0.4 3,902,806 + CA264_16740 0.61 -0.2 3,902,807 - CA264_16740 0.61 +0.6 3,902,810 + CA264_16740 0.61 -0.4 3,902,810 + CA264_16740 0.61 -0.1 3,902,811 - CA264_16740 0.62 +0.3 3,902,811 - CA264_16740 0.62 +0.2 3,902,818 + CA264_16740 0.62 -0.1 3,902,819 - CA264_16740 0.63 +1.2 3,902,819 - CA264_16740 0.63 +0.3 3,902,844 - CA264_16740 0.66 +0.1 3,902,844 - CA264_16740 0.66 +0.9 3,902,993 - CA264_16740 0.84 -0.2 3,903,033 + CA264_16740 0.89 +0.2 3,903,080 + -1.0 3,903,081 - +0.6 3,903,094 + -0.1 3,903,095 - +0.0 3,903,095 - -0.6 3,903,100 - +0.6 3,903,136 + +0.3 3,903,173 - +0.5 3,903,234 + -0.3 3,903,235 - -0.2 3,903,236 + -1.1 3,903,237 - +0.1 3,903,251 + +0.7 3,903,252 - -0.0 3,903,302 + -0.3 3,903,410 + CA264_16745 0.14 +0.1 3,903,410 + CA264_16745 0.14 -0.8 3,903,422 - CA264_16745 0.15 -0.7 3,903,422 - CA264_16745 0.15 +1.2 3,903,424 - CA264_16745 0.15 -0.1 3,903,424 - CA264_16745 0.15 -0.4 3,903,483 + CA264_16745 0.17 -0.6 3,903,577 - CA264_16745 0.21 +0.7 3,903,587 - CA264_16745 0.22 +0.1 3,903,588 + CA264_16745 0.22 -0.5 3,903,638 + CA264_16745 0.24 -2.6 3,903,638 + CA264_16745 0.24 -1.6 3,903,640 + CA264_16745 0.24 -0.9 3,903,641 - CA264_16745 0.24 +0.5 3,903,645 + CA264_16745 0.25 -0.4 3,903,646 - CA264_16745 0.25 +0.1 3,903,658 + CA264_16745 0.25 +0.3 3,903,715 - CA264_16745 0.28 -0.5 3,903,778 + CA264_16745 0.30 -1.3 3,903,895 - CA264_16745 0.36 -1.6 3,903,909 + CA264_16745 0.36 -0.8 3,903,909 + CA264_16745 0.36 -0.2 3,903,967 - CA264_16745 0.39 -0.9 3,903,986 - CA264_16745 0.40 -0.0 3,904,008 + CA264_16745 0.41 -1.1 3,904,009 - CA264_16745 0.41 -0.9 3,904,012 + CA264_16745 0.41 -0.0 3,904,028 - CA264_16745 0.42 -0.4
Or see this region's nucleotide sequence