Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15960

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15955 and CA264_15960 are separated by 96 nucleotidesCA264_15960 and CA264_15965 are separated by 2 nucleotidesCA264_15965 and CA264_15970 are separated by 60 nucleotidesCA264_15970 and CA264_15975 are separated by 28 nucleotides CA264_15955: CA264_15955 - glycine C-acetyltransferase, at 3,721,543 to 3,722,733 _15955 CA264_15960: CA264_15960 - hypothetical protein, at 3,722,830 to 3,723,117 _15960 CA264_15965: CA264_15965 - hypothetical protein, at 3,723,120 to 3,723,326 _15965 CA264_15970: CA264_15970 - hypothetical protein, at 3,723,387 to 3,723,578 _15970 CA264_15975: CA264_15975 - TIGR00159 family protein, at 3,723,607 to 3,724,446 _15975 Position (kb) 3722 3723 3724Strain fitness (log2 ratio) -2 -1 0 1 2at 3721.830 kb on - strand, within CA264_15955at 3721.830 kb on - strand, within CA264_15955at 3721.865 kb on - strand, within CA264_15955at 3721.865 kb on - strand, within CA264_15955at 3722.143 kb on + strand, within CA264_15955at 3722.144 kb on - strand, within CA264_15955at 3722.218 kb on + strand, within CA264_15955at 3722.241 kb on - strand, within CA264_15955at 3722.358 kb on + strand, within CA264_15955at 3722.381 kb on + strand, within CA264_15955at 3722.429 kb on + strand, within CA264_15955at 3722.587 kb on + strand, within CA264_15955at 3722.588 kb on - strand, within CA264_15955at 3722.602 kb on + strand, within CA264_15955at 3722.602 kb on + strand, within CA264_15955at 3722.605 kb on + strand, within CA264_15955at 3722.680 kb on - strandat 3722.706 kb on - strandat 3722.706 kb on - strandat 3722.798 kb on + strandat 3722.798 kb on + strandat 3722.805 kb on + strandat 3722.830 kb on - strandat 3722.836 kb on - strandat 3722.840 kb on + strandat 3722.840 kb on + strandat 3722.841 kb on - strandat 3722.841 kb on - strandat 3722.861 kb on + strand, within CA264_15960at 3722.940 kb on + strand, within CA264_15960at 3722.941 kb on - strand, within CA264_15960at 3722.941 kb on - strand, within CA264_15960at 3722.942 kb on + strand, within CA264_15960at 3722.943 kb on - strand, within CA264_15960at 3722.943 kb on - strand, within CA264_15960at 3722.947 kb on + strand, within CA264_15960at 3722.947 kb on + strand, within CA264_15960at 3722.947 kb on + strand, within CA264_15960at 3722.948 kb on - strand, within CA264_15960at 3722.965 kb on - strand, within CA264_15960at 3722.965 kb on - strand, within CA264_15960at 3722.971 kb on + strand, within CA264_15960at 3723.002 kb on - strand, within CA264_15960at 3723.018 kb on + strand, within CA264_15960at 3723.111 kb on - strandat 3723.172 kb on - strand, within CA264_15965at 3723.172 kb on - strand, within CA264_15965at 3723.172 kb on - strand, within CA264_15965at 3723.254 kb on - strand, within CA264_15965at 3723.265 kb on + strand, within CA264_15965at 3723.266 kb on - strand, within CA264_15965at 3723.289 kb on - strand, within CA264_15965at 3723.298 kb on + strand, within CA264_15965at 3723.303 kb on + strand, within CA264_15965at 3723.324 kb on + strandat 3723.324 kb on + strandat 3723.386 kb on + strandat 3723.391 kb on + strandat 3723.436 kb on + strand, within CA264_15970at 3723.436 kb on + strand, within CA264_15970at 3723.437 kb on - strand, within CA264_15970at 3723.516 kb on + strand, within CA264_15970at 3723.542 kb on - strand, within CA264_15970at 3723.546 kb on + strand, within CA264_15970at 3723.546 kb on + strand, within CA264_15970at 3723.547 kb on - strand, within CA264_15970at 3723.547 kb on - strand, within CA264_15970at 3723.547 kb on - strand, within CA264_15970at 3723.551 kb on - strand, within CA264_15970at 3723.551 kb on - strand, within CA264_15970at 3723.576 kb on + strandat 3723.587 kb on - strandat 3723.591 kb on + strandat 3723.608 kb on + strandat 3723.609 kb on - strandat 3723.609 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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3,721,830 - CA264_15955 0.24 -0.0
3,721,830 - CA264_15955 0.24 -0.0
3,721,865 - CA264_15955 0.27 -0.3
3,721,865 - CA264_15955 0.27 +0.1
3,722,143 + CA264_15955 0.50 +1.0
3,722,144 - CA264_15955 0.50 -0.0
3,722,218 + CA264_15955 0.57 -0.6
3,722,241 - CA264_15955 0.59 -0.6
3,722,358 + CA264_15955 0.68 -0.5
3,722,381 + CA264_15955 0.70 +0.6
3,722,429 + CA264_15955 0.74 -1.0
3,722,587 + CA264_15955 0.88 +0.8
3,722,588 - CA264_15955 0.88 +0.2
3,722,602 + CA264_15955 0.89 +0.4
3,722,602 + CA264_15955 0.89 +0.8
3,722,605 + CA264_15955 0.89 -0.8
3,722,680 - +1.8
3,722,706 - -0.9
3,722,706 - +0.6
3,722,798 + +1.0
3,722,798 + +0.5
3,722,805 + +1.0
3,722,830 - +0.5
3,722,836 - +0.9
3,722,840 + +0.5
3,722,840 + +0.9
3,722,841 - +0.2
3,722,841 - +0.4
3,722,861 + CA264_15960 0.11 +0.9
3,722,940 + CA264_15960 0.38 +0.6
3,722,941 - CA264_15960 0.39 +1.2
3,722,941 - CA264_15960 0.39 +0.2
3,722,942 + CA264_15960 0.39 +1.3
3,722,943 - CA264_15960 0.39 +0.5
3,722,943 - CA264_15960 0.39 +0.4
3,722,947 + CA264_15960 0.41 +1.4
3,722,947 + CA264_15960 0.41 +0.9
3,722,947 + CA264_15960 0.41 +1.0
3,722,948 - CA264_15960 0.41 +0.1
3,722,965 - CA264_15960 0.47 +0.6
3,722,965 - CA264_15960 0.47 +0.6
3,722,971 + CA264_15960 0.49 +0.3
3,723,002 - CA264_15960 0.60 +0.8
3,723,018 + CA264_15960 0.65 +0.9
3,723,111 - -0.2
3,723,172 - CA264_15965 0.25 +1.0
3,723,172 - CA264_15965 0.25 +0.9
3,723,172 - CA264_15965 0.25 +0.5
3,723,254 - CA264_15965 0.65 +0.7
3,723,265 + CA264_15965 0.70 +0.5
3,723,266 - CA264_15965 0.71 +0.2
3,723,289 - CA264_15965 0.82 +0.1
3,723,298 + CA264_15965 0.86 +1.5
3,723,303 + CA264_15965 0.88 +1.1
3,723,324 + +1.6
3,723,324 + +0.9
3,723,386 + +1.1
3,723,391 + +1.8
3,723,436 + CA264_15970 0.26 +0.9
3,723,436 + CA264_15970 0.26 +1.8
3,723,437 - CA264_15970 0.26 -0.1
3,723,516 + CA264_15970 0.67 -1.4
3,723,542 - CA264_15970 0.81 +1.2
3,723,546 + CA264_15970 0.83 +0.9
3,723,546 + CA264_15970 0.83 -0.1
3,723,547 - CA264_15970 0.83 +0.0
3,723,547 - CA264_15970 0.83 +0.7
3,723,547 - CA264_15970 0.83 -1.6
3,723,551 - CA264_15970 0.85 -2.1
3,723,551 - CA264_15970 0.85 +0.5
3,723,576 + +0.8
3,723,587 - +0.1
3,723,591 + +1.8
3,723,608 + +0.5
3,723,609 - +0.4
3,723,609 - -0.8

Or see this region's nucleotide sequence