Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15950

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15945 and CA264_15950 are separated by 404 nucleotidesCA264_15950 and CA264_15955 are separated by 42 nucleotides CA264_15945: CA264_15945 - NAD-dependent epimerase, at 3,718,838 to 3,719,812 _15945 CA264_15950: CA264_15950 - hypothetical protein, at 3,720,217 to 3,721,500 _15950 CA264_15955: CA264_15955 - glycine C-acetyltransferase, at 3,721,543 to 3,722,733 _15955 Position (kb) 3720 3721 3722Strain fitness (log2 ratio) -1 0 1 2at 3719.226 kb on + strand, within CA264_15945at 3719.226 kb on + strand, within CA264_15945at 3719.227 kb on - strand, within CA264_15945at 3719.230 kb on + strand, within CA264_15945at 3719.230 kb on + strand, within CA264_15945at 3719.230 kb on + strand, within CA264_15945at 3719.231 kb on - strand, within CA264_15945at 3719.231 kb on - strand, within CA264_15945at 3719.272 kb on + strand, within CA264_15945at 3719.272 kb on + strand, within CA264_15945at 3719.335 kb on - strand, within CA264_15945at 3719.373 kb on + strand, within CA264_15945at 3719.503 kb on + strand, within CA264_15945at 3719.504 kb on - strand, within CA264_15945at 3719.727 kb on + strandat 3719.728 kb on - strandat 3719.728 kb on - strandat 3719.728 kb on - strandat 3719.763 kb on - strandat 3719.817 kb on + strandat 3719.817 kb on + strandat 3719.818 kb on - strandat 3719.970 kb on - strandat 3719.970 kb on - strandat 3719.974 kb on - strandat 3719.979 kb on - strandat 3719.979 kb on - strandat 3720.012 kb on + strandat 3720.013 kb on - strandat 3720.061 kb on - strandat 3720.065 kb on - strandat 3720.065 kb on - strandat 3720.067 kb on + strandat 3720.068 kb on - strandat 3720.078 kb on + strandat 3720.125 kb on + strandat 3720.126 kb on - strandat 3720.126 kb on - strandat 3720.160 kb on + strandat 3720.160 kb on + strandat 3720.160 kb on + strandat 3720.160 kb on + strandat 3720.160 kb on + strandat 3720.161 kb on - strandat 3720.161 kb on - strandat 3720.161 kb on - strandat 3720.165 kb on - strandat 3720.165 kb on - strandat 3720.165 kb on - strandat 3720.190 kb on + strandat 3720.194 kb on + strandat 3720.216 kb on + strandat 3720.217 kb on - strandat 3720.347 kb on + strand, within CA264_15950at 3720.584 kb on + strand, within CA264_15950at 3720.681 kb on - strand, within CA264_15950at 3720.685 kb on - strand, within CA264_15950at 3720.777 kb on - strand, within CA264_15950at 3720.870 kb on + strand, within CA264_15950at 3721.341 kb on + strand, within CA264_15950at 3721.341 kb on + strand, within CA264_15950at 3721.449 kb on - strandat 3721.504 kb on + strandat 3721.505 kb on - strandat 3721.505 kb on - strandat 3721.508 kb on + strandat 3721.546 kb on + strandat 3721.568 kb on + strandat 3721.590 kb on - strandat 3721.624 kb on - strandat 3721.624 kb on - strandat 3721.624 kb on - strandat 3721.630 kb on - strandat 3721.630 kb on - strandat 3721.678 kb on - strand, within CA264_15955at 3721.786 kb on - strand, within CA264_15955at 3721.786 kb on - strand, within CA264_15955at 3721.824 kb on + strand, within CA264_15955at 3721.829 kb on + strand, within CA264_15955at 3721.829 kb on + strand, within CA264_15955at 3721.830 kb on - strand, within CA264_15955at 3721.830 kb on - strand, within CA264_15955at 3721.865 kb on - strand, within CA264_15955at 3721.865 kb on - strand, within CA264_15955at 3722.143 kb on + strand, within CA264_15955at 3722.144 kb on - strand, within CA264_15955at 3722.218 kb on + strand, within CA264_15955at 3722.241 kb on - strand, within CA264_15955at 3722.358 kb on + strand, within CA264_15955at 3722.381 kb on + strand, within CA264_15955at 3722.429 kb on + strand, within CA264_15955

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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3,719,226 + CA264_15945 0.40 -0.0
3,719,226 + CA264_15945 0.40 -0.7
3,719,227 - CA264_15945 0.40 +0.5
3,719,230 + CA264_15945 0.40 -0.8
3,719,230 + CA264_15945 0.40 -1.4
3,719,230 + CA264_15945 0.40 -0.6
3,719,231 - CA264_15945 0.40 +1.2
3,719,231 - CA264_15945 0.40 +0.5
3,719,272 + CA264_15945 0.45 -0.5
3,719,272 + CA264_15945 0.45 +0.1
3,719,335 - CA264_15945 0.51 +0.4
3,719,373 + CA264_15945 0.55 +1.5
3,719,503 + CA264_15945 0.68 -0.3
3,719,504 - CA264_15945 0.68 +0.6
3,719,727 + +2.1
3,719,728 - +0.6
3,719,728 - +1.1
3,719,728 - +0.2
3,719,763 - +0.4
3,719,817 + +0.7
3,719,817 + +0.8
3,719,818 - +0.0
3,719,970 - +0.7
3,719,970 - +0.7
3,719,974 - -0.2
3,719,979 - +1.2
3,719,979 - +0.6
3,720,012 + +1.3
3,720,013 - +1.2
3,720,061 - +1.6
3,720,065 - +0.9
3,720,065 - +0.2
3,720,067 + +1.1
3,720,068 - +0.7
3,720,078 + +1.0
3,720,125 + -0.8
3,720,126 - +0.6
3,720,126 - +0.9
3,720,160 + +0.4
3,720,160 + +0.1
3,720,160 + +0.3
3,720,160 + +0.4
3,720,160 + -0.1
3,720,161 - -0.4
3,720,161 - +0.4
3,720,161 - +0.6
3,720,165 - +0.1
3,720,165 - -0.2
3,720,165 - -1.0
3,720,190 + +0.6
3,720,194 + +0.4
3,720,216 + -0.1
3,720,217 - -1.5
3,720,347 + CA264_15950 0.10 +1.0
3,720,584 + CA264_15950 0.29 +0.0
3,720,681 - CA264_15950 0.36 +2.2
3,720,685 - CA264_15950 0.36 +1.2
3,720,777 - CA264_15950 0.44 +0.7
3,720,870 + CA264_15950 0.51 +0.7
3,721,341 + CA264_15950 0.88 +2.3
3,721,341 + CA264_15950 0.88 +0.9
3,721,449 - +0.4
3,721,504 + -0.4
3,721,505 - +0.4
3,721,505 - +0.8
3,721,508 + +1.0
3,721,546 + +2.0
3,721,568 + +0.6
3,721,590 - +0.5
3,721,624 - -1.7
3,721,624 - +1.1
3,721,624 - -0.8
3,721,630 - -0.6
3,721,630 - -0.2
3,721,678 - CA264_15955 0.11 +0.4
3,721,786 - CA264_15955 0.20 +1.4
3,721,786 - CA264_15955 0.20 -0.0
3,721,824 + CA264_15955 0.24 +1.8
3,721,829 + CA264_15955 0.24 +0.5
3,721,829 + CA264_15955 0.24 +1.2
3,721,830 - CA264_15955 0.24 -0.0
3,721,830 - CA264_15955 0.24 -0.0
3,721,865 - CA264_15955 0.27 -0.3
3,721,865 - CA264_15955 0.27 +0.1
3,722,143 + CA264_15955 0.50 +1.0
3,722,144 - CA264_15955 0.50 -0.0
3,722,218 + CA264_15955 0.57 -0.6
3,722,241 - CA264_15955 0.59 -0.6
3,722,358 + CA264_15955 0.68 -0.5
3,722,381 + CA264_15955 0.70 +0.6
3,722,429 + CA264_15955 0.74 -1.0

Or see this region's nucleotide sequence