Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_15780 and CA264_15785 are separated by 30 nucleotides CA264_15785 and CA264_15790 are separated by 238 nucleotides CA264_15790 and CA264_15795 are separated by 399 nucleotides
CA264_15780: CA264_15780 - SAM-dependent methyltransferase, at 3,683,919 to 3,684,620
_15780
CA264_15785: CA264_15785 - hypothetical protein, at 3,684,651 to 3,684,857
_15785
CA264_15790: CA264_15790 - hypothetical protein, at 3,685,096 to 3,685,542
_15790
CA264_15795: CA264_15795 - hypothetical protein, at 3,685,942 to 3,686,757
_15795
Position (kb)
3685
3686 Strain fitness (log2 ratio)
-2
-1
0
1 at 3684.165 kb on - strand, within CA264_15780 at 3684.213 kb on + strand, within CA264_15780 at 3684.214 kb on - strand, within CA264_15780 at 3684.297 kb on + strand, within CA264_15780 at 3684.297 kb on + strand, within CA264_15780 at 3684.445 kb on - strand, within CA264_15780 at 3684.564 kb on + strand at 3684.564 kb on + strand at 3684.619 kb on - strand at 3684.662 kb on + strand at 3684.662 kb on + strand at 3684.662 kb on + strand at 3684.668 kb on + strand at 3684.716 kb on + strand, within CA264_15785 at 3684.717 kb on - strand, within CA264_15785 at 3684.761 kb on - strand, within CA264_15785 at 3684.965 kb on - strand at 3684.989 kb on - strand at 3685.025 kb on + strand at 3685.025 kb on + strand at 3685.052 kb on + strand at 3685.082 kb on + strand at 3685.096 kb on - strand at 3685.096 kb on - strand at 3685.134 kb on + strand at 3685.135 kb on - strand at 3685.163 kb on + strand, within CA264_15790 at 3685.214 kb on - strand, within CA264_15790 at 3685.258 kb on + strand, within CA264_15790 at 3685.258 kb on + strand, within CA264_15790 at 3685.382 kb on + strand, within CA264_15790 at 3685.416 kb on + strand, within CA264_15790 at 3685.448 kb on - strand, within CA264_15790 at 3685.457 kb on + strand, within CA264_15790 at 3685.541 kb on - strand at 3685.663 kb on - strand at 3685.667 kb on + strand at 3685.668 kb on - strand at 3685.674 kb on - strand at 3685.674 kb on - strand at 3685.688 kb on - strand at 3685.691 kb on + strand at 3685.691 kb on + strand at 3685.691 kb on + strand at 3685.691 kb on + strand at 3685.692 kb on - strand at 3685.692 kb on - strand at 3685.790 kb on + strand at 3685.790 kb on + strand at 3685.791 kb on - strand at 3685.791 kb on - strand at 3685.791 kb on - strand at 3685.841 kb on + strand at 3685.886 kb on - strand at 3685.887 kb on + strand at 3685.887 kb on + strand at 3685.924 kb on - strand at 3685.929 kb on + strand at 3686.010 kb on + strand at 3686.011 kb on - strand at 3686.012 kb on + strand at 3686.012 kb on + strand at 3686.013 kb on - strand at 3686.036 kb on + strand, within CA264_15795 at 3686.036 kb on + strand, within CA264_15795 at 3686.065 kb on + strand, within CA264_15795 at 3686.065 kb on + strand, within CA264_15795 at 3686.067 kb on + strand, within CA264_15795 at 3686.067 kb on + strand, within CA264_15795 at 3686.068 kb on - strand, within CA264_15795 at 3686.068 kb on - strand, within CA264_15795 at 3686.068 kb on - strand, within CA264_15795 at 3686.077 kb on + strand, within CA264_15795 at 3686.077 kb on + strand, within CA264_15795 at 3686.077 kb on + strand, within CA264_15795 at 3686.077 kb on + strand, within CA264_15795 at 3686.077 kb on + strand, within CA264_15795 at 3686.078 kb on - strand, within CA264_15795 at 3686.078 kb on - strand, within CA264_15795 at 3686.078 kb on - strand, within CA264_15795 at 3686.078 kb on - strand, within CA264_15795 at 3686.078 kb on - strand, within CA264_15795 at 3686.079 kb on + strand, within CA264_15795 at 3686.083 kb on - strand, within CA264_15795 at 3686.083 kb on - strand, within CA264_15795 at 3686.137 kb on + strand, within CA264_15795 at 3686.144 kb on + strand, within CA264_15795 at 3686.151 kb on + strand, within CA264_15795 at 3686.184 kb on - strand, within CA264_15795 at 3686.209 kb on - strand, within CA264_15795 at 3686.230 kb on - strand, within CA264_15795 at 3686.234 kb on - strand, within CA264_15795 at 3686.234 kb on - strand, within CA264_15795 at 3686.234 kb on - strand, within CA264_15795 at 3686.234 kb on - strand, within CA264_15795 at 3686.234 kb on - strand, within CA264_15795 at 3686.263 kb on - strand, within CA264_15795 at 3686.263 kb on - strand, within CA264_15795 at 3686.315 kb on + strand, within CA264_15795 at 3686.316 kb on - strand, within CA264_15795 at 3686.316 kb on - strand, within CA264_15795 at 3686.340 kb on - strand, within CA264_15795 at 3686.340 kb on - strand, within CA264_15795 at 3686.389 kb on + strand, within CA264_15795 at 3686.390 kb on - strand, within CA264_15795 at 3686.400 kb on + strand, within CA264_15795 at 3686.414 kb on + strand, within CA264_15795 at 3686.415 kb on - strand, within CA264_15795 at 3686.415 kb on - strand, within CA264_15795 at 3686.432 kb on + strand, within CA264_15795 at 3686.432 kb on + strand, within CA264_15795 at 3686.432 kb on + strand, within CA264_15795 at 3686.465 kb on - strand, within CA264_15795 at 3686.490 kb on - strand, within CA264_15795 at 3686.494 kb on + strand, within CA264_15795 at 3686.519 kb on - strand, within CA264_15795 at 3686.519 kb on - strand, within CA264_15795
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 3,684,165 - CA264_15780 0.35 +0.1 3,684,213 + CA264_15780 0.42 -0.4 3,684,214 - CA264_15780 0.42 +0.1 3,684,297 + CA264_15780 0.54 -0.3 3,684,297 + CA264_15780 0.54 +0.3 3,684,445 - CA264_15780 0.75 +0.3 3,684,564 + -0.2 3,684,564 + +0.7 3,684,619 - -0.3 3,684,662 + -0.6 3,684,662 + -0.0 3,684,662 + -0.4 3,684,668 + -0.2 3,684,716 + CA264_15785 0.31 +0.3 3,684,717 - CA264_15785 0.32 +0.5 3,684,761 - CA264_15785 0.53 -0.7 3,684,965 - -0.2 3,684,989 - +1.0 3,685,025 + +1.2 3,685,025 + +1.0 3,685,052 + +0.5 3,685,082 + -1.1 3,685,096 - -0.1 3,685,096 - +0.4 3,685,134 + +0.6 3,685,135 - +0.3 3,685,163 + CA264_15790 0.15 +0.1 3,685,214 - CA264_15790 0.26 +0.1 3,685,258 + CA264_15790 0.36 +0.8 3,685,258 + CA264_15790 0.36 +0.8 3,685,382 + CA264_15790 0.64 +1.0 3,685,416 + CA264_15790 0.72 +1.0 3,685,448 - CA264_15790 0.79 +0.3 3,685,457 + CA264_15790 0.81 +0.1 3,685,541 - +1.0 3,685,663 - +0.6 3,685,667 + -0.4 3,685,668 - +0.4 3,685,674 - +0.1 3,685,674 - -0.1 3,685,688 - +1.0 3,685,691 + -0.3 3,685,691 + +0.4 3,685,691 + -0.9 3,685,691 + -0.4 3,685,692 - +0.7 3,685,692 - +0.4 3,685,790 + -0.9 3,685,790 + -1.1 3,685,791 - +0.4 3,685,791 - -0.3 3,685,791 - +0.5 3,685,841 + -0.1 3,685,886 - -0.1 3,685,887 + -1.4 3,685,887 + -2.1 3,685,924 - +0.8 3,685,929 + -0.5 3,686,010 + -0.6 3,686,011 - +1.6 3,686,012 + -1.0 3,686,012 + -0.3 3,686,013 - +1.3 3,686,036 + CA264_15795 0.12 -1.1 3,686,036 + CA264_15795 0.12 -0.4 3,686,065 + CA264_15795 0.15 -0.8 3,686,065 + CA264_15795 0.15 -0.9 3,686,067 + CA264_15795 0.15 -0.9 3,686,067 + CA264_15795 0.15 -0.9 3,686,068 - CA264_15795 0.15 +0.6 3,686,068 - CA264_15795 0.15 +0.8 3,686,068 - CA264_15795 0.15 +0.2 3,686,077 + CA264_15795 0.17 -0.9 3,686,077 + CA264_15795 0.17 -0.7 3,686,077 + CA264_15795 0.17 -0.6 3,686,077 + CA264_15795 0.17 -0.8 3,686,077 + CA264_15795 0.17 -0.0 3,686,078 - CA264_15795 0.17 +0.7 3,686,078 - CA264_15795 0.17 +1.1 3,686,078 - CA264_15795 0.17 -0.2 3,686,078 - CA264_15795 0.17 +0.7 3,686,078 - CA264_15795 0.17 +0.5 3,686,079 + CA264_15795 0.17 -0.5 3,686,083 - CA264_15795 0.17 +0.3 3,686,083 - CA264_15795 0.17 +1.4 3,686,137 + CA264_15795 0.24 -0.8 3,686,144 + CA264_15795 0.25 -0.3 3,686,151 + CA264_15795 0.26 +1.7 3,686,184 - CA264_15795 0.30 +0.1 3,686,209 - CA264_15795 0.33 -0.2 3,686,230 - CA264_15795 0.35 +0.1 3,686,234 - CA264_15795 0.36 +0.4 3,686,234 - CA264_15795 0.36 +0.5 3,686,234 - CA264_15795 0.36 +0.4 3,686,234 - CA264_15795 0.36 +0.4 3,686,234 - CA264_15795 0.36 +0.6 3,686,263 - CA264_15795 0.39 -1.5 3,686,263 - CA264_15795 0.39 +0.9 3,686,315 + CA264_15795 0.46 -0.3 3,686,316 - CA264_15795 0.46 -2.1 3,686,316 - CA264_15795 0.46 -0.2 3,686,340 - CA264_15795 0.49 +0.9 3,686,340 - CA264_15795 0.49 +0.1 3,686,389 + CA264_15795 0.55 -2.5 3,686,390 - CA264_15795 0.55 +0.3 3,686,400 + CA264_15795 0.56 -1.0 3,686,414 + CA264_15795 0.58 -0.9 3,686,415 - CA264_15795 0.58 -0.3 3,686,415 - CA264_15795 0.58 +0.3 3,686,432 + CA264_15795 0.60 -0.7 3,686,432 + CA264_15795 0.60 -2.1 3,686,432 + CA264_15795 0.60 -0.8 3,686,465 - CA264_15795 0.64 +0.1 3,686,490 - CA264_15795 0.67 +1.3 3,686,494 + CA264_15795 0.68 -1.1 3,686,519 - CA264_15795 0.71 +0.8 3,686,519 - CA264_15795 0.71 +0.7
Or see this region's nucleotide sequence