Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15710

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15700 and CA264_15705 are separated by 99 nucleotidesCA264_15705 and CA264_15710 are separated by 153 nucleotidesCA264_15710 and CA264_15715 are separated by 3 nucleotides CA264_15700: CA264_15700 - UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase, at 3,665,386 to 3,666,675 _15700 CA264_15705: CA264_15705 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 3,666,775 to 3,667,317 _15705 CA264_15710: CA264_15710 - hypothetical protein, at 3,667,471 to 3,668,205 _15710 CA264_15715: CA264_15715 - GTPase HflX, at 3,668,209 to 3,669,396 _15715 Position (kb) 3667 3668 3669Strain fitness (log2 ratio) -1 0 1 2 3at 3666.754 kb on + strandat 3666.776 kb on + strandat 3667.325 kb on + strandat 3667.329 kb on + strandat 3667.329 kb on + strandat 3667.330 kb on - strandat 3667.356 kb on + strandat 3667.356 kb on + strandat 3667.356 kb on + strandat 3667.356 kb on + strandat 3667.359 kb on + strandat 3667.387 kb on + strandat 3667.403 kb on - strandat 3667.516 kb on - strandat 3667.516 kb on - strandat 3667.518 kb on - strandat 3667.520 kb on + strandat 3667.520 kb on + strandat 3667.521 kb on - strandat 3667.563 kb on + strand, within CA264_15710at 3667.564 kb on - strand, within CA264_15710at 3667.566 kb on + strand, within CA264_15710at 3667.662 kb on + strand, within CA264_15710at 3667.662 kb on + strand, within CA264_15710at 3667.666 kb on + strand, within CA264_15710at 3667.667 kb on - strand, within CA264_15710at 3667.667 kb on - strand, within CA264_15710at 3667.733 kb on + strand, within CA264_15710at 3667.734 kb on - strand, within CA264_15710at 3667.734 kb on - strand, within CA264_15710at 3667.737 kb on - strand, within CA264_15710at 3667.761 kb on - strand, within CA264_15710at 3667.793 kb on - strand, within CA264_15710at 3667.999 kb on + strand, within CA264_15710at 3668.073 kb on - strand, within CA264_15710at 3668.088 kb on - strand, within CA264_15710at 3668.088 kb on - strand, within CA264_15710at 3668.100 kb on - strand, within CA264_15710at 3668.183 kb on - strandat 3668.185 kb on - strandat 3668.271 kb on - strandat 3668.359 kb on - strand, within CA264_15715at 3668.437 kb on + strand, within CA264_15715at 3668.437 kb on + strand, within CA264_15715at 3668.437 kb on + strand, within CA264_15715at 3668.438 kb on - strand, within CA264_15715at 3668.441 kb on + strand, within CA264_15715at 3668.441 kb on + strand, within CA264_15715at 3668.442 kb on - strand, within CA264_15715at 3668.507 kb on + strand, within CA264_15715at 3668.550 kb on + strand, within CA264_15715at 3668.551 kb on - strand, within CA264_15715at 3668.551 kb on - strand, within CA264_15715at 3668.552 kb on + strand, within CA264_15715at 3668.661 kb on - strand, within CA264_15715at 3668.661 kb on - strand, within CA264_15715at 3668.839 kb on + strand, within CA264_15715at 3668.842 kb on - strand, within CA264_15715at 3668.945 kb on + strand, within CA264_15715at 3668.945 kb on + strand, within CA264_15715at 3669.024 kb on + strand, within CA264_15715at 3669.024 kb on + strand, within CA264_15715at 3669.045 kb on - strand, within CA264_15715at 3669.138 kb on + strand, within CA264_15715at 3669.179 kb on + strand, within CA264_15715

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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3,666,754 + +1.7
3,666,776 + -1.3
3,667,325 + -0.3
3,667,329 + +3.1
3,667,329 + +1.1
3,667,330 - +2.7
3,667,356 + +0.8
3,667,356 + +0.6
3,667,356 + +0.8
3,667,356 + +1.4
3,667,359 + +0.7
3,667,387 + +1.0
3,667,403 - +1.0
3,667,516 - +0.7
3,667,516 - +0.6
3,667,518 - +1.1
3,667,520 + +0.7
3,667,520 + +1.2
3,667,521 - -0.1
3,667,563 + CA264_15710 0.13 +1.3
3,667,564 - CA264_15710 0.13 +1.0
3,667,566 + CA264_15710 0.13 +1.1
3,667,662 + CA264_15710 0.26 +1.4
3,667,662 + CA264_15710 0.26 +1.1
3,667,666 + CA264_15710 0.27 +1.3
3,667,667 - CA264_15710 0.27 +0.8
3,667,667 - CA264_15710 0.27 +0.9
3,667,733 + CA264_15710 0.36 +1.5
3,667,734 - CA264_15710 0.36 +0.6
3,667,734 - CA264_15710 0.36 -0.8
3,667,737 - CA264_15710 0.36 +1.0
3,667,761 - CA264_15710 0.39 +1.0
3,667,793 - CA264_15710 0.44 +0.9
3,667,999 + CA264_15710 0.72 +1.6
3,668,073 - CA264_15710 0.82 +0.2
3,668,088 - CA264_15710 0.84 +0.7
3,668,088 - CA264_15710 0.84 +1.2
3,668,100 - CA264_15710 0.86 +1.1
3,668,183 - +0.3
3,668,185 - +0.8
3,668,271 - +0.7
3,668,359 - CA264_15715 0.13 +0.6
3,668,437 + CA264_15715 0.19 +1.1
3,668,437 + CA264_15715 0.19 +1.3
3,668,437 + CA264_15715 0.19 +1.6
3,668,438 - CA264_15715 0.19 +1.2
3,668,441 + CA264_15715 0.20 +1.5
3,668,441 + CA264_15715 0.20 -0.7
3,668,442 - CA264_15715 0.20 -0.0
3,668,507 + CA264_15715 0.25 +1.5
3,668,550 + CA264_15715 0.29 +1.6
3,668,551 - CA264_15715 0.29 +0.3
3,668,551 - CA264_15715 0.29 +0.8
3,668,552 + CA264_15715 0.29 +0.6
3,668,661 - CA264_15715 0.38 +0.6
3,668,661 - CA264_15715 0.38 +0.6
3,668,839 + CA264_15715 0.53 +1.3
3,668,842 - CA264_15715 0.53 -0.1
3,668,945 + CA264_15715 0.62 +1.4
3,668,945 + CA264_15715 0.62 +1.0
3,669,024 + CA264_15715 0.69 +0.0
3,669,024 + CA264_15715 0.69 +2.0
3,669,045 - CA264_15715 0.70 +1.0
3,669,138 + CA264_15715 0.78 +1.2
3,669,179 + CA264_15715 0.82 +0.1

Or see this region's nucleotide sequence