Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15675

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15660 and CA264_15665 are separated by 320 nucleotidesCA264_15665 and CA264_15670 are separated by 2 nucleotidesCA264_15670 and CA264_15675 are separated by 114 nucleotidesCA264_15675 and CA264_15680 are separated by 8 nucleotidesCA264_15680 and CA264_15685 are separated by 3 nucleotides CA264_15660: CA264_15660 - 50S ribosomal protein L28, at 3,658,639 to 3,658,878 _15660 CA264_15665: CA264_15665 - 50S ribosomal protein L33, at 3,659,199 to 3,659,387 _15665 CA264_15670: CA264_15670 - DUF4295 domain-containing protein, at 3,659,390 to 3,659,542 _15670 CA264_15675: CA264_15675 - signal recognition particle-docking protein FtsY, at 3,659,657 to 3,660,616 _15675 CA264_15680: CA264_15680 - hypothetical protein, at 3,660,625 to 3,661,167 _15680 CA264_15685: CA264_15685 - 30S ribosomal protein S12 methylthiotransferase RimO, at 3,661,171 to 3,662,484 _15685 Position (kb) 3659 3660 3661Strain fitness (log2 ratio) -1 0 1 2at 3658.853 kb on + strand, within CA264_15660at 3658.864 kb on + strandat 3658.864 kb on + strandat 3658.864 kb on + strandat 3658.876 kb on + strandat 3658.877 kb on - strandat 3658.966 kb on + strandat 3658.998 kb on + strandat 3659.088 kb on + strandat 3659.092 kb on + strandat 3659.119 kb on - strandat 3659.119 kb on - strandat 3659.520 kb on + strand, within CA264_15670at 3659.520 kb on + strand, within CA264_15670at 3659.533 kb on + strandat 3659.533 kb on + strandat 3659.543 kb on + strandat 3659.573 kb on + strandat 3659.573 kb on + strandat 3659.641 kb on + strandat 3660.892 kb on + strand, within CA264_15680at 3660.892 kb on + strand, within CA264_15680at 3660.892 kb on + strand, within CA264_15680at 3660.892 kb on + strand, within CA264_15680at 3660.893 kb on - strand, within CA264_15680at 3660.899 kb on - strand, within CA264_15680at 3660.963 kb on + strand, within CA264_15680at 3661.031 kb on - strand, within CA264_15680at 3661.109 kb on + strand, within CA264_15680at 3661.110 kb on - strand, within CA264_15680at 3661.151 kb on - strandat 3661.162 kb on + strandat 3661.163 kb on - strandat 3661.165 kb on + strandat 3661.179 kb on - strandat 3661.197 kb on + strandat 3661.208 kb on + strandat 3661.209 kb on - strandat 3661.212 kb on + strandat 3661.212 kb on + strandat 3661.213 kb on - strandat 3661.213 kb on - strandat 3661.315 kb on - strand, within CA264_15685at 3661.416 kb on - strand, within CA264_15685at 3661.426 kb on + strand, within CA264_15685at 3661.426 kb on + strand, within CA264_15685at 3661.427 kb on - strand, within CA264_15685at 3661.430 kb on + strand, within CA264_15685at 3661.453 kb on + strand, within CA264_15685at 3661.454 kb on - strand, within CA264_15685at 3661.495 kb on + strand, within CA264_15685at 3661.600 kb on + strand, within CA264_15685at 3661.600 kb on + strand, within CA264_15685at 3661.601 kb on - strand, within CA264_15685at 3661.605 kb on + strand, within CA264_15685at 3661.606 kb on - strand, within CA264_15685

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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3,658,853 + CA264_15660 0.89 +1.4
3,658,864 + +1.2
3,658,864 + +1.2
3,658,864 + +1.9
3,658,876 + +0.2
3,658,877 - -0.5
3,658,966 + +0.3
3,658,998 + -0.5
3,659,088 + +0.8
3,659,092 + -0.1
3,659,119 - +2.2
3,659,119 - +2.4
3,659,520 + CA264_15670 0.85 +0.8
3,659,520 + CA264_15670 0.85 +0.5
3,659,533 + -0.8
3,659,533 + -0.2
3,659,543 + +0.6
3,659,573 + +0.2
3,659,573 + -0.1
3,659,641 + +0.8
3,660,892 + CA264_15680 0.49 +1.8
3,660,892 + CA264_15680 0.49 -0.0
3,660,892 + CA264_15680 0.49 +0.3
3,660,892 + CA264_15680 0.49 +0.0
3,660,893 - CA264_15680 0.49 +0.5
3,660,899 - CA264_15680 0.50 +1.1
3,660,963 + CA264_15680 0.62 +0.9
3,661,031 - CA264_15680 0.75 +1.2
3,661,109 + CA264_15680 0.89 +1.3
3,661,110 - CA264_15680 0.89 +0.5
3,661,151 - -0.7
3,661,162 + +0.3
3,661,163 - +0.4
3,661,165 + +0.0
3,661,179 - -0.1
3,661,197 + -0.1
3,661,208 + +0.8
3,661,209 - -0.0
3,661,212 + +0.3
3,661,212 + -0.4
3,661,213 - -0.9
3,661,213 - -1.2
3,661,315 - CA264_15685 0.11 -0.1
3,661,416 - CA264_15685 0.19 +0.3
3,661,426 + CA264_15685 0.19 +0.4
3,661,426 + CA264_15685 0.19 +0.1
3,661,427 - CA264_15685 0.19 -0.4
3,661,430 + CA264_15685 0.20 -1.3
3,661,453 + CA264_15685 0.21 +0.7
3,661,454 - CA264_15685 0.22 -0.0
3,661,495 + CA264_15685 0.25 +2.0
3,661,600 + CA264_15685 0.33 -0.8
3,661,600 + CA264_15685 0.33 -0.0
3,661,601 - CA264_15685 0.33 -1.0
3,661,605 + CA264_15685 0.33 +0.3
3,661,606 - CA264_15685 0.33 +0.1

Or see this region's nucleotide sequence