Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14705

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14695 and CA264_14700 are separated by 44 nucleotidesCA264_14700 and CA264_14705 are separated by 517 nucleotidesCA264_14705 and CA264_14710 are separated by 194 nucleotides CA264_14695: CA264_14695 - ribonuclease P protein component, at 3,455,216 to 3,455,626 _14695 CA264_14700: CA264_14700 - 50S ribosomal protein L34, at 3,455,671 to 3,455,832 _14700 CA264_14705: CA264_14705 - peptidase M61, at 3,456,350 to 3,458,065 _14705 CA264_14710: CA264_14710 - geranylgeranyl reductase, at 3,458,260 to 3,459,498 _14710 Position (kb) 3456 3457 3458 3459Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3455.639 kb on - strandat 3456.010 kb on - strandat 3456.010 kb on - strandat 3456.014 kb on + strandat 3456.015 kb on - strandat 3456.073 kb on - strandat 3456.289 kb on + strandat 3456.289 kb on + strandat 3456.290 kb on - strandat 3456.291 kb on + strandat 3456.292 kb on - strandat 3456.292 kb on - strandat 3456.292 kb on - strandat 3456.292 kb on - strandat 3456.321 kb on - strandat 3456.328 kb on + strandat 3456.329 kb on - strandat 3456.345 kb on + strandat 3456.345 kb on + strandat 3456.349 kb on + strandat 3456.349 kb on + strandat 3456.350 kb on - strandat 3456.350 kb on - strandat 3456.356 kb on + strandat 3456.357 kb on - strandat 3456.357 kb on - strandat 3456.357 kb on - strandat 3456.357 kb on - strandat 3456.357 kb on - strandat 3456.359 kb on + strandat 3456.409 kb on + strandat 3456.474 kb on - strandat 3456.795 kb on + strand, within CA264_14705at 3456.796 kb on - strand, within CA264_14705at 3457.001 kb on + strand, within CA264_14705at 3457.002 kb on - strand, within CA264_14705at 3457.008 kb on - strand, within CA264_14705at 3457.028 kb on + strand, within CA264_14705at 3457.037 kb on + strand, within CA264_14705at 3457.073 kb on - strand, within CA264_14705at 3457.073 kb on - strand, within CA264_14705at 3457.112 kb on + strand, within CA264_14705at 3457.112 kb on + strand, within CA264_14705at 3457.223 kb on - strand, within CA264_14705at 3457.232 kb on + strand, within CA264_14705at 3457.259 kb on + strand, within CA264_14705at 3457.268 kb on + strand, within CA264_14705at 3457.307 kb on + strand, within CA264_14705at 3457.353 kb on - strand, within CA264_14705at 3457.410 kb on - strand, within CA264_14705at 3457.442 kb on - strand, within CA264_14705at 3457.488 kb on + strand, within CA264_14705at 3457.647 kb on + strand, within CA264_14705at 3457.761 kb on + strand, within CA264_14705at 3457.824 kb on + strand, within CA264_14705at 3457.824 kb on + strand, within CA264_14705at 3457.824 kb on + strand, within CA264_14705at 3457.825 kb on - strand, within CA264_14705at 3457.828 kb on + strand, within CA264_14705at 3457.828 kb on + strand, within CA264_14705at 3457.828 kb on + strand, within CA264_14705at 3457.828 kb on + strand, within CA264_14705at 3457.829 kb on - strand, within CA264_14705at 3457.951 kb on - strandat 3457.976 kb on + strandat 3457.980 kb on - strandat 3457.988 kb on + strandat 3457.988 kb on + strandat 3457.989 kb on - strandat 3458.068 kb on + strandat 3458.068 kb on + strandat 3458.073 kb on - strandat 3458.076 kb on - strandat 3458.116 kb on + strandat 3458.116 kb on + strandat 3458.140 kb on + strandat 3458.168 kb on + strandat 3458.182 kb on + strandat 3458.212 kb on + strandat 3458.245 kb on + strandat 3458.245 kb on + strandat 3458.246 kb on - strandat 3458.246 kb on - strandat 3458.246 kb on - strandat 3458.266 kb on - strandat 3458.317 kb on + strandat 3458.318 kb on - strandat 3458.318 kb on - strandat 3458.318 kb on - strandat 3458.331 kb on + strandat 3458.331 kb on + strandat 3458.331 kb on + strandat 3458.332 kb on - strandat 3458.332 kb on - strandat 3458.332 kb on - strandat 3458.365 kb on - strandat 3458.402 kb on + strand, within CA264_14710at 3458.469 kb on + strand, within CA264_14710at 3458.621 kb on + strand, within CA264_14710at 3458.622 kb on - strand, within CA264_14710at 3458.622 kb on - strand, within CA264_14710at 3458.625 kb on + strand, within CA264_14710at 3458.801 kb on - strand, within CA264_14710at 3458.921 kb on + strand, within CA264_14710at 3458.921 kb on + strand, within CA264_14710at 3458.942 kb on + strand, within CA264_14710at 3459.059 kb on - strand, within CA264_14710

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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3,455,639 - +2.0
3,456,010 - +0.0
3,456,010 - +0.0
3,456,014 + -1.0
3,456,015 - +2.3
3,456,073 - -0.0
3,456,289 + -0.8
3,456,289 + +0.1
3,456,290 - +1.2
3,456,291 + -0.3
3,456,292 - +0.6
3,456,292 - +0.1
3,456,292 - +0.5
3,456,292 - +0.6
3,456,321 - +0.4
3,456,328 + -0.5
3,456,329 - +0.7
3,456,345 + -0.8
3,456,345 + -0.8
3,456,349 + -0.6
3,456,349 + -0.3
3,456,350 - +0.5
3,456,350 - +1.3
3,456,356 + -0.4
3,456,357 - +0.2
3,456,357 - +1.9
3,456,357 - +1.1
3,456,357 - +0.7
3,456,357 - -0.4
3,456,359 + -1.0
3,456,409 + -0.3
3,456,474 - +1.3
3,456,795 + CA264_14705 0.26 -0.3
3,456,796 - CA264_14705 0.26 +1.5
3,457,001 + CA264_14705 0.38 -1.5
3,457,002 - CA264_14705 0.38 -0.0
3,457,008 - CA264_14705 0.38 +0.5
3,457,028 + CA264_14705 0.40 -2.9
3,457,037 + CA264_14705 0.40 -0.8
3,457,073 - CA264_14705 0.42 +0.8
3,457,073 - CA264_14705 0.42 +0.7
3,457,112 + CA264_14705 0.44 -0.8
3,457,112 + CA264_14705 0.44 -0.7
3,457,223 - CA264_14705 0.51 -1.9
3,457,232 + CA264_14705 0.51 -0.6
3,457,259 + CA264_14705 0.53 -0.8
3,457,268 + CA264_14705 0.53 -0.9
3,457,307 + CA264_14705 0.56 -0.4
3,457,353 - CA264_14705 0.58 -0.1
3,457,410 - CA264_14705 0.62 +0.3
3,457,442 - CA264_14705 0.64 -0.2
3,457,488 + CA264_14705 0.66 -0.4
3,457,647 + CA264_14705 0.76 -0.4
3,457,761 + CA264_14705 0.82 -0.9
3,457,824 + CA264_14705 0.86 -0.1
3,457,824 + CA264_14705 0.86 -2.2
3,457,824 + CA264_14705 0.86 -0.8
3,457,825 - CA264_14705 0.86 +0.3
3,457,828 + CA264_14705 0.86 -0.2
3,457,828 + CA264_14705 0.86 -1.0
3,457,828 + CA264_14705 0.86 -0.4
3,457,828 + CA264_14705 0.86 -0.9
3,457,829 - CA264_14705 0.86 +0.6
3,457,951 - -0.4
3,457,976 + +0.3
3,457,980 - -0.2
3,457,988 + -0.6
3,457,988 + -0.3
3,457,989 - +0.7
3,458,068 + -0.1
3,458,068 + -0.8
3,458,073 - -0.8
3,458,076 - +0.7
3,458,116 + -1.0
3,458,116 + -1.9
3,458,140 + -1.1
3,458,168 + -0.2
3,458,182 + +0.3
3,458,212 + -1.4
3,458,245 + +0.2
3,458,245 + -1.5
3,458,246 - -0.1
3,458,246 - -0.9
3,458,246 - -0.3
3,458,266 - -0.5
3,458,317 + -0.9
3,458,318 - -0.7
3,458,318 - -1.1
3,458,318 - -0.7
3,458,331 + -0.1
3,458,331 + -0.2
3,458,331 + -0.1
3,458,332 - +0.4
3,458,332 - -0.1
3,458,332 - -0.3
3,458,365 - -1.0
3,458,402 + CA264_14710 0.11 -1.4
3,458,469 + CA264_14710 0.17 -0.5
3,458,621 + CA264_14710 0.29 -0.6
3,458,622 - CA264_14710 0.29 -0.2
3,458,622 - CA264_14710 0.29 -0.5
3,458,625 + CA264_14710 0.29 -0.1
3,458,801 - CA264_14710 0.44 -1.0
3,458,921 + CA264_14710 0.53 -2.3
3,458,921 + CA264_14710 0.53 -0.1
3,458,942 + CA264_14710 0.55 +1.4
3,459,059 - CA264_14710 0.64 +0.2

Or see this region's nucleotide sequence